SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3) - Rat Genome Database

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Gene: SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3) Chlorocebus sabaeus
Analyze
Symbol: SPOCK3
Name: SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3
RGD ID: 18343456
Description: ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); metalloendopeptidase inhibitor activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3; testican-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17113,040,250 - 113,531,535 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603792,911,004 - 93,407,584 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SPOCK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17113,040,250 - 113,531,535 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603792,911,004 - 93,407,584 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SPOCK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384166,733,384 - 167,234,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4166,733,384 - 167,234,796 (-)EnsemblGRCh38hg38GRCh38
GRCh374167,654,535 - 168,155,645 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364167,891,110 - 168,392,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 344168,030,065 - 168,530,435NCBI
Celera4164,991,472 - 165,486,546 (-)NCBICelera
Cytogenetic Map4q32.3NCBI
HuRef4163,410,545 - 163,907,393 (-)NCBIHuRef
CHM1_14167,631,151 - 168,132,191 (-)NCBICHM1_1
T2T-CHM13v2.04170,090,608 - 170,592,260 (-)NCBIT2T-CHM13v2.0
Spock3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39863,404,034 - 63,810,135 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl863,404,043 - 63,810,137 (+)EnsemblGRCm39 Ensembl
GRCm38862,951,000 - 63,357,101 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl862,951,009 - 63,357,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv37865,430,243 - 65,835,895 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36865,843,638 - 66,249,290 (+)NCBIMGSCv36mm8
Celera865,512,708 - 65,916,870 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map831.97NCBI
Spock3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81631,149,698 - 31,582,280 (-)NCBIGRCr8
mRatBN7.21626,382,895 - 26,815,943 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1626,383,383 - 26,815,205 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1629,739,811 - 30,166,034 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01633,174,030 - 33,600,260 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01629,125,663 - 29,558,060 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01628,372,067 - 28,716,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1628,372,411 - 28,716,885 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01628,585,376 - 28,585,974 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01628,243,878 - 28,508,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41629,337,211 - 29,751,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11629,338,682 - 29,751,934 (-)NCBI
Celera1626,444,211 - 26,865,494 (-)NCBICelera
Cytogenetic Map16p13NCBI
Spock3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540338,476,182 - 38,873,299 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540338,476,251 - 38,870,760 (+)NCBIChiLan1.0ChiLan1.0
SPOCK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23164,496,748 - 164,993,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14164,853,204 - 165,349,118 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04158,941,142 - 159,437,078 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14171,022,442 - 171,517,007 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4171,022,442 - 171,517,005 (-)Ensemblpanpan1.1panPan2
SPOCK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11562,395,713 - 62,661,308 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1562,395,707 - 62,661,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1562,643,947 - 62,987,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01563,258,302 - 63,662,698 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1563,258,312 - 63,662,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11562,479,645 - 62,885,412 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01562,486,843 - 62,894,078 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01562,881,445 - 63,286,336 (-)NCBIUU_Cfam_GSD_1.0
Spock3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494319,142,044 - 19,268,651 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493685138,492 - 442,152 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936851316,979 - 443,444 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPOCK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1421,754,539 - 22,121,044 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11421,754,419 - 22,121,051 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21423,434,435 - 23,504,836 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Spock3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624932244,836 - 627,930 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624932243,415 - 628,331 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008000218   ⟹   XP_007998409
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17113,040,250 - 113,531,535 (-)NCBI
Vero_WHO_p1.0NW_02366603792,911,004 - 93,407,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008000219   ⟹   XP_007998410
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17113,040,250 - 113,531,534 (-)NCBI
Vero_WHO_p1.0NW_02366603792,911,004 - 93,407,584 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007998409 (Get FASTA)   NCBI Sequence Viewer  
  XP_007998410 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007998409   ⟸   XM_008000218
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007998410   ⟸   XM_008000219
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene SPOCK3 ENTREZGENE