PSMB7 (proteasome 20S subunit beta 7) - Rat Genome Database

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Gene: PSMB7 (proteasome 20S subunit beta 7) Chlorocebus sabaeus
Analyze
Symbol: PSMB7
Name: proteasome 20S subunit beta 7
RGD ID: 18338002
Description: ENCODES a protein that exhibits threonine-type endopeptidase activity (inferred); INVOLVED IN proteolysis involved in protein catabolic process (inferred); ASSOCIATED WITH atrial fibrillation (ortholog); coat/hair pigmentation trait (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit beta 7; proteasome subunit beta type-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,722,982 - 13,790,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,728,724 - 13,793,290 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,286,572 - 2,349,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
coat/hair pigmentation trait  ISOPSMB7 (Canis lupus familiaris)9068941Coat colour and harlequinOMIAPMID:18513894 more ...

Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PSMB7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,722,982 - 13,790,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,728,724 - 13,793,290 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,286,572 - 2,349,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PSMB7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,353,465 - 124,415,442 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,353,465 - 124,415,444 (-)EnsemblGRCh38hg38GRCh38
GRCh379127,115,744 - 127,177,721 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,155,565 - 126,217,542 (-)NCBINCBI36Build 36hg18NCBI36
Build 349124,195,298 - 124,257,275NCBI
Celera997,762,981 - 97,824,932 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,700,699 - 96,790,409 (-)NCBIHuRef
CHM1_19127,264,760 - 127,326,757 (-)NCBICHM1_1
T2T-CHM13v2.09136,551,512 - 136,613,496 (-)NCBIT2T-CHM13v2.0
Psmb7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,478,058 - 38,533,964 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,478,048 - 38,534,099 (-)EnsemblGRCm39 Ensembl
GRCm38238,588,046 - 38,643,952 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,588,036 - 38,644,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv37238,443,566 - 38,499,426 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,410,055 - 38,465,915 (-)NCBIMGSCv36mm8
Celera240,309,890 - 40,367,955 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Psmb7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,767,500 - 42,827,470 (-)NCBIGRCr8
mRatBN7.2322,357,777 - 22,417,748 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,354,698 - 22,417,937 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,825,962 - 25,885,969 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,410,959 - 34,470,964 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,223,450 - 32,283,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,890,072 - 22,951,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,871,105 - 22,952,063 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,115,649 - 28,176,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,384,197 - 18,451,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,280,569 - 18,347,580 (-)NCBI
Celera320,792,720 - 20,851,768 (-)NCBICelera
Cytogenetic Map3q12NCBI
Psmb7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,706,226 - 3,761,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,706,273 - 3,761,603 (+)NCBIChiLan1.0ChiLan1.0
PSMB7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,939,086 - 15,001,084 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,941,435 - 15,003,430 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,475,378 - 95,540,314 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19123,995,678 - 124,057,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9123,995,678 - 124,057,483 (-)Ensemblpanpan1.1panPan2
PSMB7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,529,646 - 58,593,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,529,723 - 58,593,016 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,726,668 - 57,789,932 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,449,060 - 59,512,699 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,449,136 - 59,512,699 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1958,207,216 - 58,270,483 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,523,766 - 58,587,042 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,614,281 - 58,677,679 (+)NCBIUU_Cfam_GSD_1.0
Psmb7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,866,027 - 192,921,441 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648712,631,612 - 12,689,936 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648712,634,561 - 12,689,914 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,172,237 - 265,235,387 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,172,257 - 265,235,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21298,943,412 - 299,006,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Psmb7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,678,673 - 10,738,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,678,800 - 10,738,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 15 60
Low 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000011628   ⟹   ENSCSAP00000009696
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1213,728,724 - 13,793,290 (+)Ensembl
RefSeq Acc Id: XM_008006299   ⟹   XP_008004490
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11213,722,982 - 13,790,427 (+)NCBI
Vero_WHO_p1.0NW_0236660792,286,572 - 2,349,790 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008004490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009696.1
Reference Protein Sequences
RefSeq Acc Id: XP_008004490   ⟸   XM_008006299
- UniProtKB: A0A0D9RM57 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000009696   ⟸   ENSCSAT00000011628


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013536 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011628.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/TrEMBL
  Proteasome_bsu_C UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/TrEMBL
NCBI Gene PSMB7 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA TYPE-7 UniProtKB/TrEMBL
Pfam Pr_beta_C UniProtKB/TrEMBL
  Proteasome UniProtKB/TrEMBL
PRINTS PROTEASOME UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A0D9RM57 ENTREZGENE, UniProtKB/TrEMBL