AL591893.1 (putative UPF0607 protein ENSP00000383783) - Rat Genome Database

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Gene: AL591893.1 (putative UPF0607 protein ENSP00000383783) Homo sapiens
Analyze
Symbol: AL591893.1
Name: putative UPF0607 protein ENSP00000383783
RGD ID: 16570996
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: LOC100131107; UPF0607 protein ENSP00000383783-like
RGD Orthologs
Bonobo
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381152,079,557 - 152,080,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1152,079,557 - 152,080,903 (-)EnsemblGRCh38hg38GRCh38
GRCh371152,052,033 - 152,053,283 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q21.3NCBI
HuRef1123,429,929 - 123,430,954 (-)NCBIHuRef
CHM1_11153,447,364 - 153,448,389 (-)NCBICHM1_1
T2T-CHM13v2.01151,203,103 - 151,204,353 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16710414   PMID:21873635  


Genomics

Comparative Map Data
AL591893.1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381152,079,557 - 152,080,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1152,079,557 - 152,080,903 (-)EnsemblGRCh38hg38GRCh38
GRCh371152,052,033 - 152,053,283 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q21.3NCBI
HuRef1123,429,929 - 123,430,954 (-)NCBIHuRef
CHM1_11153,447,364 - 153,448,389 (-)NCBICHM1_1
T2T-CHM13v2.01151,203,103 - 151,204,353 (-)NCBIT2T-CHM13v2.0
LOC100995410
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,742,804 - 97,744,718 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,494,006 - 97,495,920 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,438,066 - 127,439,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,080,860 - 131,082,359 (-)NCBIpanpan1.1PanPan1.1panPan2


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.3(chr1:151858531-152298574)x1 copy number loss See cases [RCV000143761] Chr1:151858531..152298574 [GRCh38]
Chr1:151831007..152271050 [GRCh37]
Chr1:150097631..150537674 [NCBI36]
Chr1:1q21.3		 uncertain significance
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENST00000432386
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system hemolymphoid system reproductive system
High
Medium
Low 4
Below cutoff 1 4 5

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000649623
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1152,079,557 - 152,080,903 (-)Ensembl
RefSeq Acc Id: NR_172723
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381152,079,557 - 152,080,807 (-)NCBI
T2T-CHM13v2.01151,203,103 - 151,204,353 (-)NCBI
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A8MUI8-F1-model_v2 AlphaFold A8MUI8 1-341 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC AL591893.1 COSMIC
Ensembl Genes ENSG00000285818 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000649623 ENTREZGENE
GTEx ENSG00000285818 GTEx
Human Proteome Map AL591893.1 Human Proteome Map
NCBI Gene LOC100131107 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AL591893.1  putative UPF0607 protein ENSP00000383783  LOC100131107  putative UPF0607 protein ENSP00000383783  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100131107  putative UPF0607 protein ENSP00000383783  AL591893.1  putative UPF0607 protein ENSP00000383783  Symbol and/or name change 5135510 APPROVED