AC008581.2 (novel protein, AGGF1-ZBED3-AS1 readthrough) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AC008581.2 (novel protein, AGGF1-ZBED3-AS1 readthrough) Homo sapiens
Analyze
Symbol: AC008581.2
Name: novel protein, AGGF1-ZBED3-AS1 readthrough
RGD ID: 16570609
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN positive regulation of angiogenesis (inferred); vasculogenesis (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl577,030,902 - 77,152,155 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium
Low 4 2 2
Below cutoff 9 2 2 13 2 20 12 17 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000646704   ⟹   ENSP00000495089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,030,902 - 77,152,155 (+)Ensembl
Protein Sequences
Ensembl Protein ENSP00000495089.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000495089   ⟸   ENST00000646704
Protein Domains
FHA   G-patch


Additional Information

Database Acc Id Source(s)
COSMIC AC008581.2 COSMIC
Ensembl Genes ENSG00000285000 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000646704.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
GTEx ENSG00000285000 GTEx
Human Proteome Map AC008581.2 Human Proteome Map
InterPro AGGF1_OCRE UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  G_patch_dom UniProtKB/TrEMBL
  OCRE UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
PANTHER ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 UniProtKB/TrEMBL
  ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  G-patch UniProtKB/TrEMBL
  OCRE UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  G_PATCH UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
  G_patch UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A2R8YFF1_HUMAN UniProtKB/TrEMBL