AC025048.6 (adaptor-related protein complex 1, sigma 2 subunit (AP1S2) pseudogene) - Rat Genome Database

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Gene: AC025048.6 (adaptor-related protein complex 1, sigma 2 subunit (AP1S2) pseudogene) Homo sapiens
Analyze
Symbol: AC025048.6
Name: adaptor-related protein complex 1, sigma 2 subunit (AP1S2) pseudogene
RGD ID: 16569915
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: adaptor related protein complex 1 sigma 2 subunit pseudogene; LOC653653
Related Functional Gene: AP1S2  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381760,101,760 - 60,102,919 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1760,101,759 - 60,102,919 (-)EnsemblGRCh38hg38GRCh38
GRCh371758,179,121 - 58,180,280 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q23.1NCBI
HuRef1753,551,172 - 53,552,331 (-)NCBIHuRef
CHM1_11758,243,135 - 58,244,294 (-)NCBICHM1_1
T2T-CHM13v2.01760,970,715 - 60,971,874 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 49 8 2
Low 166 78 56 24 548 24 401 132 287 51 140 221 5 46 167 1
Below cutoff 1781 2070 1074 220 744 80 3087 1736 2740 84 871 1067 147 1003 2121 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000627667
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1760,102,225 - 60,102,662 (-)Ensembl
RefSeq Acc Id: ENST00000634326
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1760,101,759 - 60,102,919 (-)Ensembl
RefSeq Acc Id: NR_027408
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381760,101,760 - 60,102,919 (-)NCBI
T2T-CHM13v2.01760,970,715 - 60,971,874 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAG58538 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC AC025048.6 COSMIC
Ensembl Genes ENSG00000280852 Ensembl
  ENSG00000293358 ENTREZGENE
Ensembl Transcript ENST00000634326 ENTREZGENE
GTEx ENSG00000280852 GTEx
  ENSG00000293358 GTEx
Human Proteome Map AC025048.6 Human Proteome Map
NCBI Gene LOC653653 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC025048.6  adaptor-related protein complex 1, sigma 2 subunit (AP1S2) pseudogene  LOC653653  adaptor related protein complex 1 sigma 2 subunit pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC653653  adaptor related protein complex 1 sigma 2 subunit pseudogene  AC025048.6  adaptor-related protein complex 1, sigma 2 subunit (AP1S2) pseudogene  Symbol and/or name change 5135510 APPROVED