AC003002.3 (novel transcript) - Rat Genome Database

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Gene: AC003002.3 (novel transcript) Homo sapiens
Analyze
Symbol: AC003002.3
Name: novel transcript
RGD ID: 16565207
Description: INVOLVED IN regulation of DNA-templated transcription (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1957,389,884 - 57,419,994 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:507
Count of miRNA genes:389
Interacting mature miRNAs:418
Transcripts:ENST00000596400, ENST00000596617, ENST00000600421
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium
Low 32 3 44 22 279 24 38 26 113 70 116 149 3 1
Below cutoff 122 25 173 131 320 133 178 35 48 206 181 195 5 1 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000596400   ⟹   ENSP00000472277
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,390,008 - 57,419,994 (+)Ensembl
RefSeq Acc Id: ENST00000596617   ⟹   ENSP00000471870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,389,884 - 57,418,012 (+)Ensembl
RefSeq Acc Id: ENST00000600421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,389,987 - 57,411,167 (+)Ensembl
Protein Sequences
Ensembl Protein ENSP00000471870.1
  ENSP00000472277.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000472277   ⟸   ENST00000596400
RefSeq Acc Id: ENSP00000471870   ⟸   ENST00000596617
Protein Domains
KRAB


Additional Information

Database Acc Id Source(s)
COSMIC AC003002.3 COSMIC
Ensembl Genes ENSG00000269533 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000596400.1 UniProtKB/TrEMBL
  ENST00000596617.5 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
GTEx ENSG00000269533 GTEx
Human Proteome Map AC003002.3 Human Proteome Map
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 747 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
UniProt M0R1H3_HUMAN UniProtKB/TrEMBL
  M0R233_HUMAN UniProtKB/TrEMBL