AC004076.1 (novel transcript) - Rat Genome Database

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Gene: AC004076.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC004076.1
Name: novel transcript
RGD ID: 16564923
Description: INVOLVED IN regulation of DNA-templated transcription (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1957,437,970 - 57,477,536 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:334
Count of miRNA genes:279
Interacting mature miRNAs:286
Transcripts:ENST00000415705, ENST00000596831, ENST00000601945
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system appendage entire extraembryonic component pharyngeal arch
High
Medium 5 3 1 1 24 1 1 2 1 1
Low 23 14 37 19 160 19 64 10 72 52 106 103 2 3 2
Below cutoff 98 17 167 122 276 126 178 49 81 200 166 233 6 1 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000415705
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,455,448 - 57,477,536 (-)Ensembl
RefSeq Acc Id: ENST00000596831   ⟹   ENSP00000470969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,437,970 - 57,477,503 (-)Ensembl
RefSeq Acc Id: ENST00000601945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,455,379 - 57,456,239 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000470969.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000470969   ⟸   ENST00000596831
Protein Domains
KRAB


Additional Information

Database Acc Id Source(s)
COSMIC AC004076.1 COSMIC
Ensembl Genes ENSG00000268163 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000596831.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
GTEx ENSG00000268163 GTEx
Human Proteome Map AC004076.1 Human Proteome Map
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 747 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
UniProt M0R036_HUMAN UniProtKB/TrEMBL