AC004223.3 (RAD51L3-RFFL readthrough) - Rat Genome Database

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Gene: AC004223.3 (RAD51L3-RFFL readthrough) Homo sapiens
Analyze
Symbol: AC004223.3
Name: RAD51L3-RFFL readthrough
RGD ID: 16564743
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent DNA damage sensor activity (inferred); DNA binding (inferred); INVOLVED IN DNA metabolic process (inferred); DNA repair (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1735,011,349 - 35,121,493 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:790
Count of miRNA genes:571
Interacting mature miRNAs:637
Transcripts:ENST00000591723, ENST00000592181, ENST00000593039
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system entire extraembryonic component
High
Medium
Low
Below cutoff 23 1 11 4 65 4 22 5 14 13 32 37 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000591723   ⟹   ENSP00000467986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1735,016,569 - 35,121,449 (-)Ensembl
RefSeq Acc Id: ENST00000592181   ⟹   ENSP00000464799
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1735,026,496 - 35,120,065 (-)Ensembl
RefSeq Acc Id: ENST00000593039   ⟹   ENSP00000466834
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1735,011,349 - 35,121,493 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000464799.1
  ENSP00000466834.1
  ENSP00000467986.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000467986   ⟸   ENST00000591723
RefSeq Acc Id: ENSP00000464799   ⟸   ENST00000592181
RefSeq Acc Id: ENSP00000466834   ⟸   ENST00000593039
Protein Domains
RecA family profile   RING-type


Additional Information

Database Acc Id Source(s)
COSMIC AC004223.3 COSMIC
Ensembl Genes ENSG00000267618 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000591723.5 UniProtKB/TrEMBL
  ENST00000592181.1 UniProtKB/TrEMBL
  ENST00000593039.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
GTEx ENSG00000267618 GTEx
Human Proteome Map AC004223.3 Human Proteome Map
InterPro DNA_recomb/repair_Rad51_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Rad51D_C UniProtKB/TrEMBL
  RecA_ATP-bd UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  DNA REPAIR PROTEIN RAD51 HOMOLOG 4 UniProtKB/TrEMBL
  DNA REPAIR PROTEIN RAD51 HOMOLOG 4 UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE RIFIFYLIN UniProtKB/TrEMBL
Pfam Rad51 UniProtKB/TrEMBL
  zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE RECA_2 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt K7EIL6_HUMAN UniProtKB/TrEMBL
  K7EN88_HUMAN UniProtKB/TrEMBL
  K7EQU8_HUMAN UniProtKB/TrEMBL