AC009831.2 (epsin- like pseudogene) - Rat Genome Database

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Gene: AC009831.2 (epsin- like pseudogene) Homo sapiens
Analyze
Symbol: AC009831.2
Name: epsin- like pseudogene
RGD ID: 16564189
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: epsin 2 pseudogene; LOC100287539
Related Functional Gene: EPN2  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381831,966,960 - 31,967,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1831,966,960 - 31,967,545 (+)EnsemblGRCh38hg38GRCh38
GRCh371829,546,923 - 29,547,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q12.1NCBI
HuRef1826,403,629 - 26,404,213 (+)NCBIHuRef
CHM1_11829,474,300 - 29,474,884 (+)NCBICHM1_1
T2T-CHM13v2.01832,157,317 - 32,157,902 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:238
Interacting mature miRNAs:256
Transcripts:ENST00000582538
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 251 12 2
Below cutoff 55 58 24 6 29 4 178 41 210 10 162 49 2 24 120

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000582538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1831,966,960 - 31,967,545 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC009831.2 COSMIC
Ensembl Genes ENSG00000266105 Ensembl, ENTREZGENE
GTEx ENSG00000266105 GTEx
Human Proteome Map AC009831.2 Human Proteome Map
NCBI Gene LOC100287539 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC009831.2  epsin- like pseudogene  LOC100287539  epsin 2 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100287539  epsin 2 pseudogene  AC009831.2  epsin- like pseudogene  Symbol and/or name change 5135510 APPROVED