AC011448.1 (novel protein) - Rat Genome Database

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Gene: AC011448.1 (novel protein) Homo sapiens
Analyze
Symbol: AC011448.1
Name: novel protein
RGD ID: 16561793
Description: FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial respiratory chain complex I (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1919,516,227 - 19,536,076 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:589
Count of miRNA genes:402
Interacting mature miRNAs:421
Transcripts:ENST00000555938, ENST00000586674
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system appendage entire extraembryonic component pharyngeal arch
High
Medium 8 7 4 3 11 2 3 5 31 1 16 11 4 1 2 2
Low 130 18 39 23 373 27 257 59 113 66 142 221 8 1 3
Below cutoff 5 13 34 31 176 31 8 5 20 23 44 6 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000555938   ⟹   ENSP00000452549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1919,516,227 - 19,536,076 (+)Ensembl
RefSeq Acc Id: ENST00000586674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1919,516,229 - 19,533,476 (+)Ensembl
Protein Sequences
Ensembl Protein ENSP00000452549.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000452549   ⟸   ENST00000555938
Protein Domains
YjeF N-terminal


Additional Information

Database Acc Id Source(s)
COSMIC AC011448.1 COSMIC
Ensembl Genes ENSG00000258674 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000555938.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10260 UniProtKB/TrEMBL
GTEx ENSG00000258674 GTEx
Human Proteome Map AC011448.1 Human Proteome Map
InterPro GRIM-19 UniProtKB/TrEMBL
  YjeF_N_dom UniProtKB/TrEMBL
  YjeF_N_dom_sf UniProtKB/TrEMBL
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13 UniProtKB/TrEMBL
  NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13 UniProtKB/TrEMBL
Pfam GRIM-19 UniProtKB/TrEMBL
  YjeF_N UniProtKB/TrEMBL
PROSITE YJEF_N UniProtKB/TrEMBL
Superfamily-SCOP SSF64153 UniProtKB/TrEMBL
UniProt E7ENQ6_HUMAN UniProtKB/TrEMBL