Gene: AP001830.2 (novel transcript, antisense to TMEM123) Homo sapiens |
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Analyze |
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Symbol: |
AP001830.2 |
Name: |
novel transcript, antisense to TMEM123 |
RGD ID: |
16560781 |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Previously known as: |
LOC102723838; uncharacterized LOC102723838 |
Allele / Splice: |
See ClinVar data |
Latest Assembly: |
GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 11 | 102,467,255 - 102,498,801 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 11 | 102,467,255 - 102,498,801 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 11 | 102,337,986 - 102,369,532 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 11 | q22.2 | NCBI | | | | | CHM1_1 | 11 | 102,220,991 - 102,252,544 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 11 | 102,469,386 - 102,500,939 (+) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: | 29 | Count of miRNA genes: | 29 | Interacting mature miRNAs: | 29 | Transcripts: | ENST00000529278 | Prediction methods: | Microtar, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
High |
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Medium |
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1
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Low |
1
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30
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30
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17
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30
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1
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83
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2
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Below cutoff |
39
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24
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153
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151
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47
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146
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52
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10
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33
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17
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255
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20
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5
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8
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33
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Sequence
RefSeq Acc Id: |
ENST00000529278 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 11 | 102,467,255 - 102,498,801 (+) | Ensembl |
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RefSeq Acc Id: |
NR_135076 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 11 | 102,467,255 - 102,498,801 (+) | NCBI | T2T-CHM13v2.0 | 11 | 102,469,386 - 102,500,939 (+) | NCBI |
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Sequence: |
GGTCAAGGTCATCCAGAGACCTGTCCTCCTGCATAGCCTTGTTGGGAAGGACCAACAGGTGGCT TGCTGGTGCCTGAGACACAAGAGACTGGTGAGATGAGCTGAAAATGGGAGGTATTTAACGGGTG CTTACTCTGTGTCATGTGCCCTTCTTGCTGCTGAACAAAGTGGATAAATTCCTTGCCTGAAAGT AATTAAGGAAGAGGAGAATGGATACTGGAGAAAATAGTGATCCATCACAGCCCACTCCTTTGGC CCTCCATGTAGCCAGGCTCACCATTTTTTCTCAGCAGTGGAGCGTAATCACCACATACCAACAA CCCAAAGTCCTGTCTGGGTGCTGCATCCATCTCCAAGTCCAGGATCTCTGGGTGATGTGCTGTC CTCTCCATCAAGTGACAGGGTGGCTCTTGCCTCCCACACCTACATCCAGTATGTAATGATGTTG TAGAATGGTATATCTGCAATAAAATCTCTCTTTCACAAATGGAAAAAAAAAAAAAAA
hide sequence
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2020-06-25 |
AP001830.2 |
novel transcript, antisense to TMEM123 |
LOC102723838 |
uncharacterized LOC102723838 |
Symbol and/or name change |
19259462 |
PROVISIONAL |
2020-06-18 |
LOC102723838 |
uncharacterized LOC102723838 |
AP001830.2 |
novel transcript, antisense to TMEM123 |
Symbol and/or name change |
5135510 |
APPROVED |
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