AP001830.2 (novel transcript, antisense to TMEM123) - Rat Genome Database

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Gene: AP001830.2 (novel transcript, antisense to TMEM123) Homo sapiens
Analyze
Symbol: AP001830.2
Name: novel transcript, antisense to TMEM123
RGD ID: 16560781
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC102723838; uncharacterized LOC102723838
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811102,467,255 - 102,498,801 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11102,467,255 - 102,498,801 (+)EnsemblGRCh38hg38GRCh38
GRCh3711102,337,986 - 102,369,532 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q22.2NCBI
CHM1_111102,220,991 - 102,252,544 (+)NCBICHM1_1
T2T-CHM13v2.011102,469,386 - 102,500,939 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in AP001830.2
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q14.1-22.2(chr11:85242847-102920097)x1 copy number loss See cases [RCV000052711] Chr11:85242847..102920097 [GRCh38]
Chr11:84953891..102738968 [GRCh37]
Chr11:84631539..102296037 [NCBI36]
Chr11:11q14.1-22.2
pathogenic
GRCh38/hg38 11q22.1-25(chr11:100348599-135040246)x3 copy number gain See cases [RCV000053638] Chr11:100348599..135040246 [GRCh38]
Chr11:100219331..134910140 [GRCh37]
Chr11:99724541..134415350 [NCBI36]
Chr11:11q22.1-25
pathogenic
GRCh38/hg38 11q14.1-22.3(chr11:78232836-106779420)x1 copy number loss See cases [RCV000052710] Chr11:78232836..106779420 [GRCh38]
Chr11:77943882..106650146 [GRCh37]
Chr11:77621530..106155356 [NCBI36]
Chr11:11q14.1-22.3
pathogenic
GRCh38/hg38 11q22.1-22.3(chr11:98357901-106059146)x1 copy number loss See cases [RCV000136574] Chr11:98357901..106059146 [GRCh38]
Chr11:98228629..105929873 [GRCh37]
Chr11:97733839..105435083 [NCBI36]
Chr11:11q22.1-22.3
pathogenic
GRCh38/hg38 11q22.1-22.3(chr11:101452984-104044105)x3 copy number gain See cases [RCV000136846] Chr11:101452984..104044105 [GRCh38]
Chr11:101323715..103914833 [GRCh37]
Chr11:100828925..103420043 [NCBI36]
Chr11:11q22.1-22.3
pathogenic
GRCh38/hg38 11q14.3-22.3(chr11:91086659-109595582)x1 copy number loss See cases [RCV000138038] Chr11:91086659..109595582 [GRCh38]
Chr11:90819827..109466308 [GRCh37]
Chr11:90459475..108971518 [NCBI36]
Chr11:11q14.3-22.3
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENST00000529278
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 1 30 30 17 30 1 83 2
Below cutoff 39 24 153 151 47 146 52 10 33 17 255 20 5 8 33

Sequence


RefSeq Acc Id: ENST00000529278
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11102,467,255 - 102,498,801 (+)Ensembl
RefSeq Acc Id: NR_135076
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811102,467,255 - 102,498,801 (+)NCBI
T2T-CHM13v2.011102,469,386 - 102,500,939 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AP001830.2 COSMIC
Ensembl Genes ENSG00000255482 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000529278 ENTREZGENE
GTEx ENSG00000255482 GTEx
Human Proteome Map AP001830.2 Human Proteome Map
NCBI Gene LOC102723838 ENTREZGENE
RNAcentral URS0000A773E8 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AP001830.2  novel transcript, antisense to TMEM123  LOC102723838  uncharacterized LOC102723838  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102723838  uncharacterized LOC102723838  AP001830.2  novel transcript, antisense to TMEM123  Symbol and/or name change 5135510 APPROVED