AC106748.1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AC106748.1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene) Homo sapiens
Analyze
Symbol: AC106748.1
Name: NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene
RGD ID: 16558690
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100289037; SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene
Related Functional Gene: SNU13  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38597,449,365 - 97,449,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl597,449,358 - 97,449,741 (-)EnsemblGRCh38hg38GRCh38
GRCh37596,785,069 - 96,785,445 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q15NCBI
HuRef591,975,649 - 91,976,025 (-)NCBIHuRef
CHM1_1596,217,911 - 96,218,287 (-)NCBICHM1_1
T2T-CHM13v2.0597,950,421 - 97,950,797 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:92
Interacting mature miRNAs:92
Transcripts:ENST00000454801
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 5 3 6 1 108 1 13 3 5 5 14 10 1 2 7
Below cutoff 197 149 171 58 139 42 390 135 229 45 143 155 18 104 233

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000454801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl597,449,358 - 97,449,741 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC106748.1 COSMIC
Ensembl Genes ENSG00000249977 Ensembl, ENTREZGENE
GTEx ENSG00000249977 GTEx
Human Proteome Map AC106748.1 Human Proteome Map
NCBI Gene LOC100289037 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC106748.1  NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene  LOC100289037  SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100289037  SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene  AC106748.1  NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene  Symbol and/or name change 5135510 APPROVED