AC069368.1 (novel protein) - Rat Genome Database

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Gene: AC069368.1 (novel protein) Homo sapiens
Analyze
Symbol: AC069368.1
Name: novel protein
RGD ID: 16558437
Description:
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1564,841,883 - 64,930,920 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:410
Count of miRNA genes:353
Interacting mature miRNAs:377
Transcripts:ENST00000437723, ENST00000502574
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium
Low 3 3 6 3 38 4 34 9 33 2 42 17 2
Below cutoff 88 8 108 61 303 63 178 50 108 112 163 202 6 1 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000437723   ⟹   ENSP00000397942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1564,841,948 - 64,930,920 (+)Ensembl
RefSeq Acc Id: ENST00000502574
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1564,841,883 - 64,922,481 (+)Ensembl
Protein Sequences
Ensembl Protein ENSP00000397942.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000397942   ⟸   ENST00000437723
Protein Domains
PH


Additional Information

Database Acc Id Source(s)
COSMIC AC069368.1 COSMIC
Ensembl Genes ENSG00000249240 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000437723.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
GTEx ENSG00000249240 GTEx
Human Proteome Map AC069368.1 Human Proteome Map
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  PKHO1/2 UniProtKB/TrEMBL
PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY O MEMBER 2 UniProtKB/TrEMBL
  PTHR15871 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt C9J4A7_HUMAN UniProtKB/TrEMBL