FLJ12825 (uncharacterized LOC440101) - Rat Genome Database

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Gene: FLJ12825 (uncharacterized LOC440101) Homo sapiens
Analyze
Symbol: FLJ12825
Name: uncharacterized LOC440101
RGD ID: 16558095
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: AC023794.1; AC023794.2
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381254,058,254 - 54,122,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1254,058,254 - 54,122,235 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,452,038 - 54,516,018 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q13.13NCBI
HuRef1251,489,808 - 51,553,679 (+)NCBIHuRef
CHM1_11254,418,722 - 54,482,640 (+)NCBICHM1_1
T2T-CHM13v2.01254,023,821 - 54,087,792 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14702039   PMID:16344560  


Genomics

Variants

.
Variants in FLJ12825
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q13.13-13.3(chr12:53420606-56202942)x3 copy number gain See cases [RCV000141435] Chr12:53420606..56202942 [GRCh38]
Chr12:53814390..56596726 [GRCh37]
Chr12:52100657..54882993 [NCBI36]
Chr12:12q13.13-13.3		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12q13.13(chr12:53224024-54222450)x1 copy number loss See cases [RCV000052812] Chr12:53224024..54222450 [GRCh38]
Chr12:53617808..54616234 [GRCh37]
Chr12:51904075..52902501 [NCBI36]
Chr12:12q13.13		 pathogenic
GRCh38/hg38 12q13.13(chr12:53841686-54136856)x3 copy number gain See cases [RCV000141162] Chr12:53841686..54136856 [GRCh38]
Chr12:54235470..54530640 [GRCh37]
Chr12:52521737..52816907 [NCBI36]
Chr12:12q13.13		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:185
Interacting mature miRNAs:185
Transcripts:ENST00000515617
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 4
Low 663 777 132 19 214 18 2812 300 924 235 825 260 8 428 1838
Below cutoff 1737 1957 1425 464 1304 309 1517 1819 2689 165 602 1298 160 763 934 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000515617
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1254,058,254 - 54,122,234 (+)Ensembl
RefSeq Acc Id: ENST00000651657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1254,106,887 - 54,122,235 (+)Ensembl
RefSeq Acc Id: NR_026655
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381254,058,254 - 54,122,234 (+)NCBI
T2T-CHM13v2.01254,023,821 - 54,087,792 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC FLJ12825 COSMIC
Ensembl Genes ENSG00000248265 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000515617 ENTREZGENE
GTEx ENSG00000248265 GTEx
Human Proteome Map FLJ12825 Human Proteome Map
NCBI Gene FLJ12825 ENTREZGENE
RNAcentral URS000075A017 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 FLJ12825  uncharacterized LOC440101  AC023794.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-06-25 AC023794.2  novel transcript  FLJ12825  uncharacterized LOC440101  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 FLJ12825  uncharacterized LOC440101  AC023794.2  novel transcript  Symbol and/or name change 5135510 APPROVED
2020-02-07 AC023794.2  novel transcript  AC023794.1  novel transcript  Symbol and/or name change 19259462 PROVISIONAL