AC010198.1 (novel transcript) - Rat Genome Database

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Gene: AC010198.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC010198.1
Name: novel transcript
RGD ID: 16557986
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC645485; uncharacterized LOC645485
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,755,074 - 30,780,739 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,755,074 - 30,780,739 (+)EnsemblGRCh38hg38GRCh38
GRCh371230,908,008 - 30,933,673 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12p11.21NCBI
HuRef1230,673,346 - 30,698,516 (+)NCBIHuRef
CHM1_11230,873,032 - 30,898,708 (+)NCBICHM1_1
T2T-CHM13v2.01230,629,711 - 30,655,365 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in AC010198.1
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12p13.33-11.1(chr12:77187-34380176)x3 copy number gain See cases [RCV000053660] Chr12:77187..34380176 [GRCh38]
Chr12:282465..34533111 [GRCh37]
Chr12:56614..34424378 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:212976-33926913)x4 copy number gain See cases [RCV000053666] Chr12:212976..33926913 [GRCh38]
Chr12:322142..34079848 [GRCh37]
Chr12:192403..33971115 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:64620-34682902)x4 copy number gain See cases [RCV000142149] Chr12:64620..34682902 [GRCh38]
Chr12:173786..34835837 [GRCh37]
Chr12:44047..34727104 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121271-34603261)x3 copy number gain See cases [RCV000139052] Chr12:121271..34603261 [GRCh38]
Chr12:282465..34756196 [GRCh37]
Chr12:100698..34647463 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121255-34603274)x3 copy number gain See cases [RCV000136611] Chr12:121255..34603274 [GRCh38]
Chr12:282465..34756209 [GRCh37]
Chr12:100682..34647476 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:54427-34608071)x4 copy number gain See cases [RCV000139787] Chr12:54427..34608071 [GRCh38]
Chr12:282465..34761006 [GRCh37]
Chr12:33854..34652273 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p12.1-11.1(chr12:25263833-34064528)x1 copy number loss See cases [RCV000133858] Chr12:25263833..34064528 [GRCh38]
Chr12:25416767..34217463 [GRCh37]
Chr12:25308034..34108730 [NCBI36]
Chr12:12p12.1-11.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENST00000500076
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 3 12 270 4 4 3 381 7 724 38 370 143 2 73 284
Below cutoff 1500 1527 1053 278 493 162 2959 1218 2850 239 804 1068 127 912 1749 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000500076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1230,755,074 - 30,780,739 (+)Ensembl
RefSeq Acc Id: NR_135046
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381230,755,074 - 30,780,739 (+)NCBI
T2T-CHM13v2.01230,629,711 - 30,655,365 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AC010198.1 COSMIC
Ensembl Genes ENSG00000246331 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000500076 ENTREZGENE
GTEx ENSG00000246331 GTEx
Human Proteome Map AC010198.1 Human Proteome Map
NCBI Gene LOC645485 ENTREZGENE
RNAcentral URS00008C27F1 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC010198.1  novel transcript  LOC645485  uncharacterized LOC645485  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC645485  uncharacterized LOC645485  AC010198.1  novel transcript  Symbol and/or name change 5135510 APPROVED