CBLL1-AS1 (CBLL1 antisense RNA 1) - Rat Genome Database

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Gene: CBLL1-AS1 (CBLL1 antisense RNA 1) Homo sapiens
Analyze
Symbol: CBLL1-AS1
Name: CBLL1 antisense RNA 1
RGD ID: 16557546
HGNC Page HGNC:55571
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC002467.1; LOC101927974; novel transcript, antisense to CBLL1; uncharacterized LOC101927974
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,742,753 - 107,744,581 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,739,999 - 107,744,581 (-)EnsemblGRCh38hg38GRCh38
GRCh377107,383,198 - 107,385,026 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q22.3NCBI
HuRef7101,745,781 - 101,747,079 (-)NCBIHuRef
CHM1_17107,317,168 - 107,318,466 (-)NCBICHM1_1
T2T-CHM13v2.07109,061,188 - 109,063,016 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16341674   PMID:16344560  


Genomics

Variants

.
Variants in CBLL1-AS1
2 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q22.1-31.1(chr7:101807149-112414850)x1 copy number loss See cases [RCV000050924] Chr7:101807149..112414850 [GRCh38]
Chr7:101450429..112054905 [GRCh37]
Chr7:101237149..111842141 [NCBI36]
Chr7:7q22.1-31.1		 pathogenic
GRCh38/hg38 7q22.3-31.1(chr7:106261939-111228036)x1 copy number loss See cases [RCV000054158] Chr7:106261939..111228036 [GRCh38]
Chr7:105902385..110868092 [GRCh37]
Chr7:105689621..110655328 [NCBI36]
Chr7:7q22.3-31.1		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q22.3-31.1(chr7:105575647-107949294)x1 copy number loss See cases [RCV000142628] Chr7:105575647..107949294 [GRCh38]
Chr7:105216094..107589739 [GRCh37]
Chr7:105003330..107376975 [NCBI36]
Chr7:7q22.3-31.1		 uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q22.1-31.31(chr7:102196924-121278641)x1 copy number loss See cases [RCV000137522] Chr7:102196924..121278641 [GRCh38]
Chr7:101912320..120918695 [GRCh37]
Chr7:101626924..120705931 [NCBI36]
Chr7:7q22.1-31.31		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:157
Interacting mature miRNAs:173
Transcripts:ENST00000440971, ENST00000457510, ENST00000609979
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 129 191 116 1 244 1 48 84 60 15 492 139 2 1 21
Low 2297 2725 1591 603 1688 447 4237 2016 3635 400 953 1463 167 1197 2708 4
Below cutoff 6 65 15 17 13 15 68 93 13 3 2 5 2 5 58

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000440971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,742,753 - 107,744,581 (-)Ensembl
RefSeq Acc Id: ENST00000457510
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,742,817 - 107,744,128 (-)Ensembl
RefSeq Acc Id: ENST00000609979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,742,969 - 107,744,050 (-)Ensembl
RefSeq Acc Id: ENST00000653575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,742,751 - 107,744,104 (-)Ensembl
RefSeq Acc Id: ENST00000658766
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,739,999 - 107,743,595 (-)Ensembl
RefSeq Acc Id: ENST00000663315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,742,751 - 107,743,664 (-)Ensembl
RefSeq Acc Id: ENST00000671091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7107,742,756 - 107,744,151 (-)Ensembl
RefSeq Acc Id: NR_144536
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387107,742,753 - 107,743,632 (-)NCBI
T2T-CHM13v2.07109,061,188 - 109,062,067 (-)NCBI
Sequence:
RefSeq Acc Id: NR_144537
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387107,742,753 - 107,744,581 (-)NCBI
T2T-CHM13v2.07109,061,188 - 109,063,016 (-)NCBI
Sequence:
RefSeq Acc Id: NR_144539
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387107,742,753 - 107,744,058 (-)NCBI
T2T-CHM13v2.07109,061,188 - 109,062,493 (-)NCBI
Sequence:
RefSeq Acc Id: NR_144540
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387107,742,753 - 107,744,138 (-)NCBI
T2T-CHM13v2.07109,061,188 - 109,062,573 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC CBLL1-AS1 COSMIC
Ensembl Genes ENSG00000241764 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000440971 ENTREZGENE
  ENST00000653575 ENTREZGENE
  ENST00000663315 ENTREZGENE
  ENST00000671091 ENTREZGENE
GTEx ENSG00000241764 GTEx
HGNC ID HGNC:55571 ENTREZGENE
Human Proteome Map CBLL1-AS1 Human Proteome Map
NCBI Gene LOC101927974 ENTREZGENE
RNAcentral URS0000A767C6 RNACentral
  URS0000A768B5 RNACentral
  URS0000A76AC3 RNACentral
  URS0000A77209 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-26 CBLL1-AS1  CBLL1 antisense RNA 1  AC002467.1  novel transcript, antisense to CBLL1  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC002467.1  novel transcript, antisense to CBLL1  LOC101927974  uncharacterized LOC101927974  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC101927974  uncharacterized LOC101927974  AC002467.1  novel transcript, antisense to CBLL1  Symbol and/or name change 5135510 APPROVED