PTOV1P1 (PTOV1 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PTOV1P1 (PTOV1 pseudogene 1) Homo sapiens
Analyze
Symbol: PTOV1P1
Name: PTOV1 pseudogene 1
RGD ID: 16557426
HGNC Page HGNC:56490
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AC063952.2; LOC442087; prostate tumor overexpressed 1 (PTOV1) pseudogene; PTOV1, extended AT-hook containing adaptor protein pseudogene
Related Functional Gene: PTOV1  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383120,306,616 - 120,308,138 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3120,306,726 - 120,307,952 (+)EnsemblGRCh38hg38GRCh38
GRCh373120,025,463 - 120,026,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q13.33NCBI
HuRef3117,401,377 - 117,402,624 (+)NCBIHuRef
CHM1_13119,989,157 - 119,990,403 (+)NCBICHM1_1
T2T-CHM13v2.03123,026,134 - 123,027,677 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:339
Count of miRNA genes:313
Interacting mature miRNAs:337
Transcripts:ENST00000498792
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
878 1318 1714 1123 3173 916 1214 1 234 799 141 1478 3514 3486 26 2484 446 1300 905 98

Sequence


Ensembl Acc Id: ENST00000498792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3120,306,726 - 120,307,952 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PTOV1P1 COSMIC
Ensembl Genes ENSG00000240882 Ensembl, ENTREZGENE
GTEx ENSG00000240882 GTEx
HGNC ID HGNC:56490 ENTREZGENE
Human Proteome Map PTOV1P1 Human Proteome Map
NCBI Gene LOC442087 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-31 PTOV1P1  PTOV1 pseudogene 1  AC063952.2  prostate tumor overexpressed 1 (PTOV1) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC063952.2  prostate tumor overexpressed 1 (PTOV1) pseudogene  LOC442087  PTOV1, extended AT-hook containing adaptor protein pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC442087  PTOV1, extended AT-hook containing adaptor protein pseudogene  AC063952.2  prostate tumor overexpressed 1 (PTOV1) pseudogene  Symbol and/or name change 5135510 APPROVED