AC104389.5 (novel transcript) - Rat Genome Database

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Gene: AC104389.5 (novel transcript) Homo sapiens
Analyze
Symbol: AC104389.5
Name: novel transcript
RGD ID: 16557292
Description:
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl115,254,392 - 5,678,434 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:106
Interacting mature miRNAs:107
Transcripts:ENST00000394793
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 137 43 122 37 269 39 252 61 136 105 245 311 11 14 46 4
Below cutoff 815 952 782 238 919 171 1219 449 1115 168 632 637 68 436 730 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000380259   ⟹   ENSP00000369609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,254,392 - 5,678,434 (-)Ensembl
RefSeq Acc Id: ENST00000394793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,572,289 - 5,624,894 (-)Ensembl
RefSeq Acc Id: ENST00000642298
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,588,912 - 5,667,711 (-)Ensembl
RefSeq Acc Id: ENST00000643199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,254,898 - 5,345,861 (-)Ensembl
RefSeq Acc Id: ENST00000646569
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,254,880 - 5,328,413 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000369609.3
Reference Protein Sequences
RefSeq Acc Id: ENSP00000369609   ⟸   ENST00000380259


Additional Information

Database Acc Id Source(s)
COSMIC AC104389.5 COSMIC
Ensembl Genes ENSG00000239920 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000380259.7 UniProtKB/TrEMBL
GTEx ENSG00000239920 GTEx
Human Proteome Map AC104389.5 Human Proteome Map
UniProt A0A2U3TZJ3_HUMAN UniProtKB/TrEMBL