AC125238.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene) - Rat Genome Database

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Gene: AC125238.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene) Homo sapiens
Analyze
Symbol: AC125238.1
Name: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene
RGD ID: 16555510
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100287498; NDUFA4, mitochondrial complex associated pseudogene
Related Functional Gene: NDUFA4  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382203,672,178 - 203,672,405 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2203,672,175 - 203,672,423 (-)EnsemblGRCh38hg38GRCh38
GRCh372204,536,901 - 204,537,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q33.2NCBI
HuRef2196,384,151 - 196,384,378 (-)NCBIHuRef
CHM1_12204,543,487 - 204,543,714 (-)NCBICHM1_1
T2T-CHM13v2.02204,154,099 - 204,154,326 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:376
Count of miRNA genes:336
Interacting mature miRNAs:354
Transcripts:ENST00000390147, ENST00000448842
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 5
Low 6 8 13 12 7 12 12 4 4 6 170 15 2 4
Below cutoff 46 53 97 71 43 65 120 66 140 19 262 113 6 37 80

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000448842
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2203,672,175 - 203,672,423 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC125238.1 COSMIC
Ensembl Genes ENSG00000233031 Ensembl, ENTREZGENE
GTEx ENSG00000233031 GTEx
Human Proteome Map AC125238.1 Human Proteome Map
NCBI Gene LOC100287498 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC125238.1  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene  LOC100287498  NDUFA4, mitochondrial complex associated pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100287498  NDUFA4, mitochondrial complex associated pseudogene  AC125238.1  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene  Symbol and/or name change 5135510 APPROVED