Gene: CD109-AS1 (CD109 antisense RNA 1) Homo sapiens |
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Analyze |
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Symbol: |
CD109-AS1 |
Name: |
CD109 antisense RNA 1 |
RGD ID: |
16555094 |
HGNC Page |
HGNC:55765 |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Previously known as: |
AL590428.1; LOC101928489; uncharacterized LOC101928489 |
Allele / Splice: |
See ClinVar data |
Latest Assembly: |
GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 6 | 73,693,903 - 73,696,131 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 73,693,903 - 73,696,131 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 74,403,626 - 74,405,854 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 6 | q13 | NCBI | | | | | HuRef | 6 | 71,603,464 - 71,605,247 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 74,570,381 - 74,572,163 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 74,871,906 - 74,874,121 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: | 181 | Count of miRNA genes: | 177 | Interacting mature miRNAs: | 181 | Transcripts: | ENST00000428865 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
Sequence
RefSeq Acc Id: |
ENST00000428865 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 6 | 73,693,903 - 73,696,131 (-) | Ensembl |
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RefSeq Acc Id: |
NR_110889 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 6 | 73,693,903 - 73,696,131 (-) | NCBI | T2T-CHM13v2.0 | 6 | 74,871,906 - 74,874,121 (-) | NCBI |
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Sequence: |
TTTTTTTTCCCTCTTAATTCGAGTTTAGTAATCTGAAATGGGCGCGCCTAACAGCAGAGTGAGA GATCTAAATTGAGACAGGACTTGGAGGCTCCACCCCTCCCATCCCCATTACAATGGCGCTTCTC GCTGCTGTGGCAAACATCGCAAATCCAGGGGGTGAGAAAGCAGTTGCTAAACGCAGGCGGCCCC ACCTGGCCCGGCGTCCCAGCTGGCCGCGGAGAACAGAGCGCGCCCACTTCCCCGGCCCACCGGG TTCCTCAGGCTGTTTACACTAGCGCTCTACCAACGATGCCCAGGGAAAATGTTATGATTTATCA CCTTAAAAAAAAAAAGAAGAAGAGAACTCGCACTGCAGACGTTAGGTGTTGCTACTTGGAACCC TGAAAAAAAATTACCTAAGAAGATGCCTTTATATTTTTGCTACAGAAAGAATTTGGTAGAACTG TAAAGCTTGGAGCAATCTCTGAACACAGTTAGGGTTGGGTTGGCTCTCCTGTCAGAATGAAGGC CAGTGGCCGGTGGTGCCCAGGAGTTATTGATGCCCAACGCTGTCTGGCTTCTTTGCAGCTCCTC TCTCCTGCTCTCTGGCACTGCCACCATCTTCAGATGACTCAGGTTTCACCATGACTACACCATA AAAGCAGGGAACTGCCAGAAACTGTTGGAAAACAGACACATTCAGTCCCTGACAACTTAAACTT TCTAATTCATGGAGCGGTTTTAGATGGTAGCATTCTAATATGGGGCAAAATGCAAACGGAAAAG AGGTCAGCAAAAAGATGTCTCATGACAAAGCTATGTGCTAAATAAGGAAAAGTGAGAAAGTAGC ACCTAGACAAACTGTGGTTTGGGGAATCCAGAAACTTGCTTTCCTCCCTTTCCTGTTCCACCCT TTTTCTCCCTGCTGAACAGCTTGCAAAGGTCCTTATGTCCTTTCCTTCAGGCAGCCTATCTTTA GTGGCCAACTTCCTGTGCAGGCAGGACTTAGGAATGGTCAAAAGTGTCTGTGTGGATCCCTGGG TGCTGACCTGTTCCTGACACAGCTGTTACTACTGGTCTCCTCACCTCCGTTGTTCAGAGAGGAG GACCATGGTCAAGGGTGGGCCAAGCACCAAGGTCTAACTCAGTGCTTCTCACATGCCAATGTGT GTGAGAATCACATGAAAACAGACTCTGACTTGGCAGGTCTGGAACGAGGACTGGGATTCTGCTT TACTTTAGCAGACAGTAGGCCATGGAGACTCTACAAGTGGGGGCAATTTGGGGGCAATTTGATG AGCAAAGGCAATTAAGAACACAGAAAATTCTTCTCAATCTTTCACTTCATAAAGGTGGATTAAT AAATTCAGGTTCATTCTAGAGGTAGGCAAACATAAGAGGGACTGCAAAAGATTAGATGATAATG TTGCCTCCCGAGAAGACTTACAGAAAGTCTTAGAACCACATTGTATAAATCTGTGTGGATTTTA AAGTGATGCCACCTTCCTGTTTATGCCCTCCTTCCCACAATACACACTTGTCGAAAGGCGTAGT CATGCAAAAATTTAGGCATATGGATTTGCATAGAGATGAGGCTATTACATGCCTGGCACAGAGT AGCTATTCAATAAAAATGTGTTAAAAGGATTAATGAAAAATGTTCATCTCAGAAGTGGGATTTT TTATTAAGAAAAACTGAAAATGAGGCCAGGCGTGGTGGTTCACACCTGTAATCCCAGTAATTTG GGAGACCGAGGCGGGTGGATCACCTAAGGTCACGAGTTCGAGACCAACCTGACCAACATTGTGA AACCCCATCTCTACTAAAAATACAAAATTAGCCAAGTGTGGATGGTGGCACATGCCTGTAATCC GAGCTACTCAGGAGACTGAGGCAAGAGAATTGCTTGAACCTGGGCGTTGGAGGTTGCAGTGAGC CGAGATCGCAGAATTGCTCTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTC
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2021-07-26 |
CD109-AS1 |
CD109 antisense RNA 1 |
AL590428.1 |
novel transcript |
Symbol and/or name change |
19259463 |
PROVISIONAL |
2020-06-25 |
AL590428.1 |
novel transcript |
LOC101928489 |
uncharacterized LOC101928489 |
Symbol and/or name change |
19259462 |
PROVISIONAL |
2020-06-18 |
LOC101928489 |
uncharacterized LOC101928489 |
AL590428.1 |
novel transcript |
Symbol and/or name change |
5135510 |
APPROVED |
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