AC024940.1 (ovostatin 2) - Rat Genome Database

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Gene: AC024940.1 (ovostatin 2) Homo sapiens
Analyze
Symbol: AC024940.1
Name: ovostatin 2
RGD ID: 16550838
Description: INTERACTS WITH 4,4'-sulfonyldiphenol; antirheumatic drug; arsenous acid
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: AC024940.2; alpha-2-macroglobulin like 1 pseudogene; OVOS2
RGD Orthologs
Mouse
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,111,652 - 31,201,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,111,652 - 31,201,235 (-)EnsemblGRCh38hg38GRCh38
GRCh371231,264,586 - 31,354,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12p11.21NCBI
HuRef129,335,404 - 9,336,870 (-)NCBIHuRef
CHM1_11231,229,575 - 31,323,882 (-)NCBICHM1_1
T2T-CHM13v2.01230,986,156 - 31,077,760 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15060002   PMID:20808825   PMID:24112097   PMID:33961781  


Genomics

Comparative Map Data
AC024940.1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,111,652 - 31,201,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,111,652 - 31,201,235 (-)EnsemblGRCh38hg38GRCh38
GRCh371231,264,586 - 31,354,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12p11.21NCBI
HuRef129,335,404 - 9,336,870 (-)NCBIHuRef
CHM1_11231,229,575 - 31,323,882 (-)NCBICHM1_1
T2T-CHM13v2.01230,986,156 - 31,077,760 (-)NCBIT2T-CHM13v2.0
A2ml1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396128,516,785 - 128,577,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6128,516,784 - 128,558,571 (-)EnsemblGRCm39 Ensembl
GRCm386128,539,822 - 128,581,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6128,539,821 - 128,581,608 (-)EnsemblGRCm38mm10GRCm38
MGSCv376128,489,840 - 128,531,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366128,505,901 - 128,547,225 (-)NCBIMGSCv36mm8
Celera6130,215,430 - 130,258,788 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.05NCBI
A2ml1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84163,501,210 - 163,543,419 (-)NCBIGRCr8
mRatBN7.24161,815,111 - 161,857,286 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4161,814,708 - 161,857,343 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04161,863,609 - 161,907,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4161,866,078 - 161,907,767 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04227,068,033 - 227,109,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44165,560,839 - 165,603,598 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4150,516,096 - 150,558,372 (-)NCBICelera
Cytogenetic Map4q42NCBI
LOC611455
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12736,412,017 - 36,464,973 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,151,120 - 10,205,339 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02736,765,737 - 36,819,667 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12736,647,815 - 36,700,875 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02736,676,222 - 36,729,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,683,870 - 9,737,678 (-)NCBIUU_Cfam_GSD_1.0
LOC100524679
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1562,294,216 - 62,325,751 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,112,170 - 65,162,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:418
Count of miRNA genes:72
Interacting mature miRNAs:72
Transcripts:ENST00000391394, ENST00000398963, ENST00000518559, ENST00000535072, ENST00000542490, ENST00000542925
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 25 18 14 11 1 19 366 28 1 1
Low 528 348 309 49 455 23 1069 281 530 50 462 297 30 224 421 1
Below cutoff 1864 2275 1193 429 1228 298 3069 1818 3123 217 600 1223 139 966 2174 3

Sequence


RefSeq Acc Id: ENST00000391394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,659 - 31,119,110 (-)Ensembl
RefSeq Acc Id: ENST00000542490
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,652 - 31,117,471 (-)Ensembl
RefSeq Acc Id: ENST00000542925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,652 - 31,119,114 (-)Ensembl
RefSeq Acc Id: ENST00000641844
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,112,236 - 31,201,235 (-)Ensembl
RefSeq Acc Id: ENST00000642199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,172,906 - 31,200,478 (-)Ensembl
RefSeq Acc Id: ENST00000643651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,131,455 - 31,135,627 (-)Ensembl
RefSeq Acc Id: ENST00000646952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,158,897 - 31,172,377 (-)Ensembl
RefSeq Acc Id: ENST00000688317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,657 - 31,119,114 (-)Ensembl
RefSeq Acc Id: ENST00000688821
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,651 - 31,119,116 (-)Ensembl
RefSeq Acc Id: ENST00000692037
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,652 - 31,119,093 (-)Ensembl
RefSeq Acc Id: ENST00000702253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,111,652 - 31,119,163 (-)Ensembl
RefSeq Acc Id: NR_153414
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381231,111,652 - 31,201,235 (-)NCBI
T2T-CHM13v2.01230,986,156 - 31,077,760 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein AAH46190 (Get FASTA)   NCBI Sequence Viewer  
  CAD38596 (Get FASTA)   NCBI Sequence Viewer  
  CAE51409 (Get FASTA)   NCBI Sequence Viewer  
  CAH18242 (Get FASTA)   NCBI Sequence Viewer  

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IE36-F1-model_v2 AlphaFold Q6IE36 1-1432 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC AC024940.1 COSMIC
Ensembl Genes ENSG00000177359 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000641844 ENTREZGENE
GTEx ENSG00000177359 GTEx
Human Proteome Map AC024940.1 Human Proteome Map
NCBI Gene OVOS2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC024940.1  ovostatin 2  AC024940.2  ovostatin 2  Symbol and/or name change 19259462 PROVISIONAL
2020-06-25 AC024940.2  ovostatin 2  OVOS2  alpha-2-macroglobulin like 1 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 OVOS2  alpha-2-macroglobulin like 1 pseudogene  AC024940.2  ovostatin 2  Symbol and/or name change 5135510 APPROVED