Fam177a2 (family with sequence similarity 177 member A2) - Rat Genome Database

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Gene: Fam177a2 (family with sequence similarity 177 member A2) Mus musculus
Analyze
Symbol: Fam177a2
Name: family with sequence similarity 177 member A2
RGD ID: 1626270
MGI Page MGI
Description: Orthologous to human FAM177A1 (family with sequence similarity 177 member A1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1700047I17Rik2; hypothetical protein LOC100101807; MGC61221; RIKEN cDNA 1700047I17 gene 2; uncharacterized protein LOC100101807
RGD Orthologs
Human
Chinchilla
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,246,377 - 55,263,953 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,246,377 - 55,263,953 (+)EnsemblGRCm39 Ensembl
GRCm381255,199,264 - 55,217,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,199,592 - 55,217,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv371256,300,579 - 56,318,155 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map12C1NCBI
cM Map1223.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  


Genomics

Comparative Map Data
Fam177a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,246,377 - 55,263,953 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,246,377 - 55,263,953 (+)EnsemblGRCm39 Ensembl
GRCm381255,199,264 - 55,217,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,199,592 - 55,217,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv371256,300,579 - 56,318,155 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map12C1NCBI
cM Map1223.88NCBI
FAM177A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381435,081,081 - 35,113,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1435,044,907 - 35,113,130 (+)EnsemblGRCh38hg38GRCh38
GRCh371435,550,287 - 35,582,336 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361434,583,864 - 34,622,340 (+)NCBINCBI36Build 36hg18NCBI36
Build 341434,585,319 - 34,622,334NCBI
Celera1415,377,941 - 15,416,411 (+)NCBICelera
Cytogenetic Map14q13.2NCBI
HuRef1415,681,550 - 15,692,850 (+)NCBIHuRef
CHM1_11435,568,613 - 35,579,912 (+)NCBICHM1_1
T2T-CHM13v2.01429,278,015 - 29,310,078 (+)NCBIT2T-CHM13v2.0
Fam177a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540925,946,694 - 25,969,387 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540925,946,694 - 25,969,387 (-)NCBIChiLan1.0ChiLan1.0
FAM177A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12411,859,351 - 11,899,452 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2411,859,688 - 11,899,545 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666053820,999 - 861,219 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam177a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248381,657,565 - 1,680,359 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248381,655,524 - 1,685,701 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam177a2
310 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000177978   ⟹   ENSMUSP00000137377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,246,377 - 55,263,953 (+)Ensembl
GRCm38.p6 Ensembl1255,199,592 - 55,217,168 (+)Ensembl
RefSeq Acc Id: NM_001100116   ⟹   NP_001093586
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,246,377 - 55,263,953 (+)NCBI
GRCm381255,199,592 - 55,217,168 (+)NCBI
MGSCv371256,300,579 - 56,318,155 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001093586   ⟸   NM_001100116
- UniProtKB: Q9D9M7 (UniProtKB/Swiss-Prot),   Q8BR63 (UniProtKB/Swiss-Prot),   Q3TVY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137377   ⟸   ENSMUST00000177978

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BR63-F1-model_v2 AlphaFold Q8BR63 1-207 view protein structure

Promoters
RGD ID:8678286
Promoter ID:EPDNEW_M17174
Type:initiation region
Name:1700047I17Rik2_1
Description:Mus musculus RIKEN cDNA 1700047I17 gene 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381255,199,538 - 55,199,598EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3714351 AgrOrtholog
Ensembl Genes ENSMUSG00000094103 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSG00000095595 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000177768.3 UniProtKB/Swiss-Prot
  ENSMUST00000177978 ENTREZGENE
  ENSMUST00000177978.3 UniProtKB/Swiss-Prot
InterPro FAM177 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100101807 UniProtKB/Swiss-Prot
  mmu:73385 UniProtKB/Swiss-Prot
MGD MGI:3714351 ENTREZGENE
NCBI Gene 100101807 ENTREZGENE
PANTHER LP10445P UniProtKB/TrEMBL
  PROTEIN FAM177A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31206 UniProtKB/Swiss-Prot
Pfam FAM177 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam177a2 PhenoGen
UniProt F177A_MOUSE UniProtKB/Swiss-Prot
  Q3TVY3 ENTREZGENE, UniProtKB/TrEMBL
  Q8BR63 ENTREZGENE
  Q9D9M7 ENTREZGENE
UniProt Secondary Q9D9M7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-20 Fam177a2  family with sequence similarity 177 member A2  1700047I17Rik2  RIKEN cDNA 1700047I17 gene 2  Symbol and/or name change 5135510 APPROVED