ZNF285CP (zinc finger protein 285C, pseudogene) - Rat Genome Database

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Gene: ZNF285CP (zinc finger protein 285C, pseudogene) Homo sapiens
Analyze
Symbol: ZNF285CP
Name: zinc finger protein 285C, pseudogene
RGD ID: 1626191
HGNC Page HGNC:33228
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: zinc finger protein 806; ZNF806
RGD Orthologs
Mouse
Bonobo
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,304,806 - 132,323,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,309,309 - 132,318,736 (+)EnsemblGRCh38hg38GRCh38
GRCh372133,062,379 - 133,081,238 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362132,783,352 - 132,792,779 (+)NCBINCBI36Build 36hg18NCBI36
Celera2125,642,747 - 125,652,182 (+)NCBICelera
Cytogenetic Map2q21.2NCBI
HuRef2125,055,948 - 125,069,567 (+)NCBIHuRef
CHM1_12133,070,252 - 133,081,855 (+)NCBICHM1_1
T2T-CHM13v2.02132,741,141 - 132,760,006 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14702039   PMID:21873635   PMID:32941384  


Genomics

Comparative Map Data
ZNF285CP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,304,806 - 132,323,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,309,309 - 132,318,736 (+)EnsemblGRCh38hg38GRCh38
GRCh372133,062,379 - 133,081,238 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362132,783,352 - 132,792,779 (+)NCBINCBI36Build 36hg18NCBI36
Celera2125,642,747 - 125,652,182 (+)NCBICelera
Cytogenetic Map2q21.2NCBI
HuRef2125,055,948 - 125,069,567 (+)NCBIHuRef
CHM1_12133,070,252 - 133,081,855 (+)NCBICHM1_1
T2T-CHM13v2.02132,741,141 - 132,760,006 (+)NCBIT2T-CHM13v2.0
Zfp989
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl4147,056,433 - 147,075,212 (+)EnsemblGRCm39 Ensembl
GRCm38.p6 Ensembl4146,971,976 - 146,990,755 (+)EnsemblGRCm38mm10GRCm38
MGSCv374146,346,085 - 146,364,864 (+)NCBIGRCm37MGSCv37mm9NCBIm37
cM Map478.41NCBI
ZNF285CP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21342,580,780 - 42,936,692 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B42,595,752 - 42,951,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B27,511,424 - 27,546,000 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3

Variants

.
Variants in ZNF285CP
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q14.1-21.3(chr2:118086324-134964738)x1 copy number loss See cases [RCV000054058] Chr2:118086324..134964738 [GRCh38]
Chr2:118843900..135722308 [GRCh37]
Chr2:118560370..135438778 [NCBI36]
Chr2:2q14.1-21.3		 pathogenic
GRCh38/hg38 2q14.3-22.1(chr2:123445762-140592538)x1 copy number loss See cases [RCV000136714] Chr2:123445762..140592538 [GRCh38]
Chr2:124203338..141350107 [GRCh37]
Chr2:123919808..141066577 [NCBI36]
Chr2:2q14.3-22.1		 pathogenic
GRCh38/hg38 2q21.2(chr2:131961752-132598286)x3 copy number gain See cases [RCV000139116] Chr2:131961752..132598286 [GRCh38]
Chr2:132719325..133355859 [GRCh37]
Chr2:132435795..133072329 [NCBI36]
Chr2:2q21.2		 uncertain significance
GRCh38/hg38 2q21.1-21.2(chr2:131100857-132436431)x3 copy number gain See cases [RCV000141447] Chr2:131100857..132436431 [GRCh38]
Chr2:131858430..133194004 [GRCh37]
Chr2:131574900..132910474 [NCBI36]
Chr2:2q21.1-21.2		 uncertain significance
GRCh38/hg38 2q21.1-21.2(chr2:131291207-132406186)x3 copy number gain See cases [RCV000142215] Chr2:131291207..132406186 [GRCh38]
Chr2:132048780..133163759 [GRCh37]
Chr2:131765250..132880229 [NCBI36]
Chr2:2q21.1-21.2		 likely benign|uncertain significance
GRCh38/hg38 2q21.2(chr2:131964039-132600985)x3 copy number gain See cases [RCV000143365] Chr2:131964039..132600985 [GRCh38]
Chr2:132721612..133358558 [GRCh37]
Chr2:132438082..133075028 [NCBI36]
Chr2:2q21.2		 uncertain significance
GRCh37/hg19 2q14.3-22.1(chr2:128490257-138210164)x1 copy number loss See cases [RCV000445892] Chr2:128490257..138210164 [GRCh37]
Chr2:2q14.3-22.1		 pathogenic
GRCh37/hg19 2q21.2(chr2:132862067-133327977)x3 copy number gain See cases [RCV000448169] Chr2:132862067..133327977 [GRCh37]
Chr2:2q21.2		 benign
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q21.1-21.2(chr2:130920847-134220436)x3 copy number gain See cases [RCV000511730] Chr2:130920847..134220436 [GRCh37]
Chr2:2q21.1-21.2		 uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q12.1-24.3(chr2:104172062-168223828)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626436] Chr2:104172062..168223828 [GRCh37]
Chr2:2q12.1-24.3		 drug response
GRCh37/hg19 2q14.2-22.1(chr2:120571363-141627287)x1 copy number loss See cases [RCV000512348] Chr2:120571363..141627287 [GRCh37]
Chr2:2q14.2-22.1		 pathogenic
Single allele deletion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3		 likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q21.2(chr2:132603586-133086679)x3 copy number gain not provided [RCV000740608] Chr2:132603586..133086679 [GRCh37]
Chr2:2q21.2		 benign
GRCh37/hg19 2q21.1-21.2(chr2:130916858-134213436)x3 copy number gain not provided [RCV000846479] Chr2:130916858..134213436 [GRCh37]
Chr2:2q21.1-21.2		 uncertain significance
GRCh37/hg19 2q14.3-21.2(chr2:122952356-133826358)x1 copy number loss See cases [RCV001194541] Chr2:122952356..133826358 [GRCh37]
Chr2:2q14.3-21.2		 likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q13-22.3(chr2:111484468-146333604)x3 copy number gain not provided [RCV001832896] Chr2:111484468..146333604 [GRCh37]
Chr2:2q13-22.3		 pathogenic
GRCh37/hg19 2q14.3-22.2(chr2:122699106-143799629)x1 copy number loss not provided [RCV001832883] Chr2:122699106..143799629 [GRCh37]
Chr2:2q14.3-22.2		 pathogenic
GRCh37/hg19 2q13-22.3(chr2:112475655-145691999)x3 copy number gain 2q13q22.3 microduplication syndrome [RCV002226436] Chr2:112475655..145691999 [GRCh37]
Chr2:2q13-22.3		 pathogenic
GRCh37/hg19 2q21.1-21.2(chr2:131853044-133195255)x3 copy number gain See cases [RCV002292205] Chr2:131853044..133195255 [GRCh37]
Chr2:2q21.1-21.2		 uncertain significance
GRCh37/hg19 2q21.1-21.2(chr2:132058665-133163759)x3 copy number gain not provided [RCV002472400] Chr2:132058665..133163759 [GRCh37]
Chr2:2q21.1-21.2		 uncertain significance
GRCh37/hg19 2q21.1-21.2(chr2:131777624-134871884)x1 copy number loss not provided [RCV003484904] Chr2:131777624..134871884 [GRCh37]
Chr2:2q21.1-21.2		 uncertain significance
NC_000002.12:g.132318019G>A single nucleotide variant not provided [RCV003436175] Chr2:132318019 [GRCh38]
Chr2:133075592 [GRCh37]
Chr2:2q21.2		 likely benign
GRCh37/hg19 2q12.2-21.2(chr2:106755586-134302739)x1 copy number loss not specified [RCV003986380] Chr2:106755586..134302739 [GRCh37]
Chr2:2q12.2-21.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:425
Count of miRNA genes:205
Interacting mature miRNAs:210
Transcripts:ENST00000424130, ENST00000438300
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D2S2051  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372133,069,889 - 133,070,140UniSTSGRCh37
Build 362132,786,359 - 132,786,610RGDNCBI36
Celera2126,789,991 - 126,790,242UniSTS
Celera2125,645,758 - 125,646,010RGD
Cytogenetic Map2q21.2UniSTS
HuRefY7,885,064 - 7,885,316UniSTS
HuRef2125,063,257 - 125,063,508UniSTS
Whitehead-YAC Contig Map2 UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 1 3 3 5 3 64 7 85 12 181 8 12
Below cutoff 879 655 568 90 210 44 1396 504 2968 158 610 482 49 448 873 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000438300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2132,309,309 - 132,318,736 (+)Ensembl
RefSeq Acc Id: ENST00000675302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2132,304,806 - 132,322,666 (+)Ensembl
RefSeq Acc Id: ENST00000676277
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2132,304,806 - 132,326,855 (+)Ensembl
RefSeq Acc Id: ENST00000689661
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2132,304,884 - 132,322,817 (+)Ensembl
RefSeq Acc Id: NR_172491
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382132,304,806 - 132,323,665 (+)NCBI
T2T-CHM13v2.02132,741,141 - 132,760,006 (+)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:33228 AgrOrtholog
COSMIC ZNF285CP COSMIC
Ensembl Genes ENSG00000018607 Ensembl
GTEx ENSG00000018607 GTEx
HGNC ID HGNC:33228 ENTREZGENE
Human Proteome Map ZNF285CP Human Proteome Map
NCBI Gene 646915 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-08-23 ZNF285CP  zinc finger protein 285C, pseudogene  ZNF806  zinc finger protein 806  Symbol and/or name change 19259463 PROVISIONAL