Mir301b (microRNA 301b) - Rat Genome Database

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Gene: Mir301b (microRNA 301b) Mus musculus
Analyze
Symbol: Mir301b
Name: microRNA 301b
RGD ID: 1625987
MGI Page MGI
Description: Acts upstream of or within cellular response to leukemia inhibitory factor and long-term synaptic potentiation. Orthologous to human MIR301B (microRNA 301b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-30; mir-301b; Mirn3; Mirn301b
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391616,942,264 - 16,942,360 (-)NCBIGRCm39mm39
GRCm39 Ensembl1616,942,264 - 16,942,360 (-)Ensembl
GRCm381617,124,400 - 17,124,496 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,124,400 - 17,124,496 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,124,493 - 17,124,589 (-)NCBIGRCm37mm9NCBIm37
Celera1617,697,194 - 17,697,290 (-)NCBICelera
Cytogenetic Map16A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16973894   PMID:17604727   PMID:17989215   PMID:20215419   PMID:20413612   PMID:20439489   PMID:20558326   PMID:21037258   PMID:21267068   PMID:25858512   PMID:27670114  
PMID:28521108   PMID:30962417   PMID:32434961   PMID:32560816  


Genomics

Comparative Map Data
Mir301b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391616,942,264 - 16,942,360 (-)NCBIGRCm39mm39
GRCm39 Ensembl1616,942,264 - 16,942,360 (-)Ensembl
GRCm381617,124,400 - 17,124,496 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,124,400 - 17,124,496 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,124,493 - 17,124,589 (-)NCBIGRCm37mm9NCBIm37
Celera1617,697,194 - 17,697,290 (-)NCBICelera
Cytogenetic Map16A3NCBI
MIR301B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2221,652,981 - 21,653,058 (+)EnsemblGRCh38hg38GRCh38
GRCh382221,652,981 - 21,653,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372222,007,270 - 22,007,347 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,337,269 - 20,337,346 (+)NCBINCBI36hg18NCBI36
Celera225,824,810 - 5,824,887 (+)NCBI
Cytogenetic Map22q11.21NCBI
HuRef224,965,094 - 4,965,171 (+)NCBIHuRef
CHM1_12222,007,462 - 22,007,539 (+)NCBICHM1_1
Mir301b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21183,879,816 - 83,879,893 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1183,879,816 - 83,879,893 (+)Ensembl
Rnor_6.01188,129,426 - 88,129,503 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,129,426 - 88,129,503 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01191,181,973 - 91,182,050 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1182,635,547 - 82,635,624 (+)NCBICelera
Cytogenetic Map11q23NCBI
MIR301B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,924,103 - 30,924,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,924,103 - 30,924,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,881,301 - 30,881,376 (+)NCBI
ROS_Cfam_1.02632,329,837 - 32,329,912 (+)NCBI
UMICH_Zoey_3.12630,379,140 - 30,379,215 (+)NCBI
UNSW_CanFamBas_1.02630,002,840 - 30,002,915 (+)NCBI
UU_Cfam_GSD_1.02631,092,810 - 31,092,885 (+)NCBI
MIR130B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,245,041 - 50,245,120 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,245,041 - 50,245,120 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,695,562 - 53,695,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120963024Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122682710Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122702454Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16123079875Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124445989Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124445989Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128616494Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129856336Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130249113Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130996708Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16350000040000000Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16350000051600000Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16350000064800000Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16400000064800000Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16450000044700000Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16482756438827664Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16595650239956690Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16595650239956690Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16595650239956690Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16595650239956690Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16665914535200846Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16672511565669666Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16731904229406653Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16840730242407302Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16860000091100000Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined161006288144062881Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161203007246030171Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161240654246406653Mouse
15092082Igly9_mIgG glycosylation 9, GP17b (mouse)161495735920284763Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161498410348984214Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161570409149704294Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Tmx4mmu-miR-301b-3pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)19536157
Txnipmmu-miR-301b-3pTarbaseexternal_infoSequencingPOSITIVE

Predicted Targets
Summary Value
Count of predictions:18430
Count of gene targets:7798
Count of transcripts:12662
Interacting mature miRNAs:mmu-miR-301b-3p, mmu-miR-301b-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102333
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1616,942,264 - 16,942,360 (-)Ensembl
GRCm38.p6 Ensembl1617,124,400 - 17,124,496 (-)Ensembl
RefSeq Acc Id: NR_030415
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391616,942,264 - 16,942,360 (-)NCBI
GRCm381617,124,400 - 17,124,496 (-)ENTREZGENE
MGSCv371617,124,493 - 17,124,589 (-)RGD
Celera1617,697,194 - 17,697,290 (-)RGD
cM Map16 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3691602 AgrOrtholog
Ensembl Genes ENSMUSG00000076288 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102333 ENTREZGENE
MGD MGI:3691602 ENTREZGENE
miRBase MI0004122 ENTREZGENE
NCBI Gene 791069 ENTREZGENE
PhenoGen Mir301b PhenoGen
RNAcentral URS00003952AD RNACentral
  URS0000507675 RNACentral
  URS000075B83C RNACentral