Mir802 (microRNA 802) - Rat Genome Database

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Gene: Mir802 (microRNA 802) Mus musculus
Analyze
Symbol: Mir802
Name: microRNA 802
RGD ID: 1625982
MGI Page MGI
Description: Acts upstream of or within cellular response to amino acid stimulus. Is expressed in hippocampus; intermediate grey horn; and telencephalon mantle layer. Orthologous to human MIR802 (microRNA 802).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-8; mir-802; Mirn; Mirn802; mmu-mir-8; mmu-mir-802
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,166,608 - 93,166,704 (+)NCBIGRCm39mm39
GRCm39 Ensembl1693,166,608 - 93,166,704 (+)Ensembl
GRCm381693,369,720 - 93,369,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,369,720 - 93,369,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv371693,369,965 - 93,370,061 (+)NCBIGRCm37mm9NCBIm37
Celera1694,452,861 - 94,452,957 (+)NCBICelera
Cytogenetic Map16C4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16973894   PMID:17604727   PMID:20413612   PMID:20548288   PMID:21037258   PMID:21267068   PMID:22042248   PMID:23389544   PMID:23684747   PMID:26080894   PMID:29346554  
PMID:31173239   PMID:31930767   PMID:32286278   PMID:33328206   PMID:33391522   PMID:34099655  


Genomics

Comparative Map Data
Mir802
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,166,608 - 93,166,704 (+)NCBIGRCm39mm39
GRCm39 Ensembl1693,166,608 - 93,166,704 (+)Ensembl
GRCm381693,369,720 - 93,369,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,369,720 - 93,369,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv371693,369,965 - 93,370,061 (+)NCBIGRCm37mm9NCBIm37
Celera1694,452,861 - 94,452,957 (+)NCBICelera
Cytogenetic Map16C4NCBI
MIR802
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2135,720,715 - 35,720,808 (+)EnsemblGRCh38hg38GRCh38
GRCh382135,720,715 - 35,720,808 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372137,093,013 - 37,093,106 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,014,882 - 36,014,975 (+)NCBINCBI36hg18NCBI36
Celera2122,292,222 - 22,292,315 (+)NCBI
Cytogenetic Map21q22.12NCBI
HuRef2122,571,624 - 22,571,717 (+)NCBIHuRef
CHM1_12136,655,083 - 36,655,176 (+)NCBICHM1_1
Mir802
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21132,626,525 - 32,626,620 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1132,626,525 - 32,626,620 (+)Ensembl
Rnor_6.01133,570,256 - 33,570,351 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1133,570,256 - 33,570,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,163,115 - 37,163,210 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1132,271,342 - 32,271,437 (+)NCBICelera
Cytogenetic Map11q11NCBI
MIR802
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,005,200 - 31,005,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,005,200 - 31,005,289 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,105,645 - 30,105,734 (+)NCBI
ROS_Cfam_1.03130,306,239 - 30,306,328 (+)NCBI
UMICH_Zoey_3.13130,173,817 - 30,173,906 (+)NCBI
UNSW_CanFamBas_1.03130,188,162 - 30,188,251 (+)NCBI
UU_Cfam_GSD_1.03130,678,793 - 30,678,882 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166181175695811876Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6318975897189758Mouse
1300928Etia_methanol induced activation (mouse)Not determined166351701997517128Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166353044897530584Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166880383498207768Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166927924498207768Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166933072398207768Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166933072398207768Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166933072398207768Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166945759498207768Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167058336498207768Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:14622
Count of gene targets:7284
Count of transcripts:11539
Interacting mature miRNAs:mmu-miR-802-3p, mmu-miR-802-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103258
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1693,166,608 - 93,166,704 (+)Ensembl
GRCm38.p6 Ensembl1693,369,720 - 93,369,816 (+)Ensembl
RefSeq Acc Id: NR_030429
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391693,166,608 - 93,166,704 (+)NCBI
GRCm381693,369,720 - 93,369,816 (+)ENTREZGENE
MGSCv371693,369,965 - 93,370,061 (+)RGD
Celera1694,452,861 - 94,452,957 (+)RGD
cM Map16 ENTREZGENE
Sequence:
Promoters
RGD ID:13674492
Promoter ID:EPDNEW_M21395
Type:single initiation site
Name:Mir802_1
Description:Mus musculus microRNA 802 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381693,369,800 - 93,369,860EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3691608 AgrOrtholog
Ensembl Genes ENSMUSG00000076457 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000103258 ENTREZGENE
MGD MGI:3691608 ENTREZGENE
miRBase MI0004249 ENTREZGENE
NCBI Gene 791074 ENTREZGENE
PhenoGen Mir802 PhenoGen
RNAcentral URS00004EA7C8 RNACentral
  URS00005B2C05 RNACentral
  URS000075A418 RNACentral