Mir423 (microRNA 423) - Rat Genome Database
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Gene: Mir423 (microRNA 423) Mus musculus
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Symbol: Mir423
Name: microRNA 423
RGD ID: 1625969
MGI Page MGI
Description: Orthologous to human MIR423 (microRNA 423).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-423; Mirn; Mirn423; mmu-mir-4; mmu-mir-423
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,968,890 - 76,968,998 (-)NCBIGRCm39mm39
GRCm39 Ensembl1176,968,890 - 76,968,998 (-)Ensembl
GRCm381177,078,064 - 77,078,172 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,078,064 - 77,078,172 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,891,566 - 76,891,674 (-)NCBIGRCm37mm9NCBIm37
Celera1184,576,296 - 84,576,404 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:21822254   PMID:22144232   PMID:26107383   PMID:28411267   PMID:29923621  


Genomics

Comparative Map Data
Mir423
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,968,890 - 76,968,998 (-)NCBIGRCm39mm39
GRCm39 Ensembl1176,968,890 - 76,968,998 (-)Ensembl
GRCm381177,078,064 - 77,078,172 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,078,064 - 77,078,172 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,891,566 - 76,891,674 (-)NCBIGRCm37mm9NCBIm37
Celera1184,576,296 - 84,576,404 (-)NCBICelera
Cytogenetic Map11B5NCBI
MIR423
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1730,117,079 - 30,117,172 (+)EnsemblGRCh38hg38GRCh38
GRCh381730,117,079 - 30,117,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371728,444,097 - 28,444,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361725,468,222 - 25,468,315 (+)NCBINCBI36hg18NCBI36
Celera1725,305,698 - 25,305,791 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1724,654,483 - 24,654,576 (+)NCBIHuRef
CHM1_11728,506,600 - 28,506,693 (+)NCBICHM1_1
Mir423
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21061,914,142 - 61,914,220 (-)NCBI
Rnor_6.0 Ensembl1063,098,360 - 63,098,453 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01063,098,366 - 63,098,444 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01062,796,752 - 62,796,830 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1060,921,503 - 60,921,581 (-)NCBICelera
Cytogenetic Map10q24NCBI
MIR423A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1944,155,913 - 44,155,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR423
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,211,525 - 46,211,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,211,525 - 46,211,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,287,019 - 48,287,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Cdkn1ammu-miR-423-3pOncomiRDBexternal_infoNANA21890460

Predicted Targets
Summary Value
Count of predictions:48790
Count of gene targets:17273
Count of transcripts:34380
Interacting mature miRNAs:mmu-miR-423-3p, mmu-miR-423-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083584
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,078,064 - 77,078,172 (-)Ensembl
RefSeq Acc Id: NR_030756
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,968,890 - 76,968,998 (-)NCBI
GRCm381177,078,064 - 77,078,172 (-)ENTREZGENE
MGSCv371176,891,566 - 76,891,674 (-)RGD
Celera1184,576,296 - 84,576,404 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Promoters
RGD ID:8675624
Promoter ID:EPDNEW_M15842
Type:single initiation site
Name:Mir423_1
Description:Mus musculus microRNA 423 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381177,078,082 - 77,078,142EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629888 AgrOrtholog
Ensembl Genes ENSMUSG00000065518 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083584 ENTREZGENE
MGD MGI:3629888 ENTREZGENE
miRBase MI0004637 ENTREZGENE
NCBI Gene 751519 ENTREZGENE
PhenoGen Mir423 PhenoGen
RNAcentral URS00000BE495 RNACentral
  URS00001C8A86 RNACentral
  URS000075A408 RNACentral