Mir496a (microRNA 496a) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Mir496a (microRNA 496a) Mus musculus
Analyze
Symbol: Mir496a
Name: microRNA 496a
RGD ID: 1625964
MGI Page MGI
Description: Involved in cellular response to ethanol and cellular response to phenylalanine. Orthologous to human MIR496 (microRNA 496).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-496a; Mir496; Mirn; Mirn496; mmu-mir-4; mmu-mir-496; mmu-mir-496a
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,705,553 - 109,705,631 (+)NCBIGRCm39mm39
GRCm3812109,739,119 - 109,739,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,739,119 - 109,739,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,977,329 - 110,977,407 (+)NCBIGRCm37mm9NCBIm37
Celera12110,936,349 - 110,936,427 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:19091803   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:21822254   PMID:22144232   PMID:24614228   PMID:26822703  


Genomics

Comparative Map Data
Mir496a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,705,553 - 109,705,631 (+)NCBIGRCm39mm39
GRCm3812109,739,119 - 109,739,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,739,119 - 109,739,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,977,329 - 110,977,407 (+)NCBIGRCm37mm9NCBIm37
Celera12110,936,349 - 110,936,427 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR496
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14101,060,573 - 101,060,674 (+)EnsemblGRCh38hg38GRCh38
GRCh3814101,060,573 - 101,060,674 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714101,526,910 - 101,527,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,596,662 - 100,596,763 (+)NCBINCBI36hg18NCBI36
Celera1481,582,971 - 81,583,072 (+)NCBI
Cytogenetic Map14q32.31NCBI
HuRef1481,710,283 - 81,710,384 (+)NCBIHuRef
CHM1_114101,465,932 - 101,466,033 (+)NCBICHM1_1
Mir496
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26128,753,644 - 128,753,722 (+)NCBI
Rnor_6.0 Ensembl6133,889,283 - 133,889,361 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06133,889,283 - 133,889,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06143,051,640 - 143,051,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6126,338,023 - 126,338,101 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR496
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl869,289,410 - 69,289,507 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1869,289,410 - 69,289,507 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:15867
Count of gene targets:8211
Count of transcripts:13005
Interacting mature miRNAs:mmu-miR-496a-3p, mmu-miR-496a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093627
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12109,739,119 - 109,739,197 (+)Ensembl
RefSeq Acc Id: NR_030437
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,705,553 - 109,705,631 (+)NCBI
GRCm3812109,739,119 - 109,739,197 (+)ENTREZGENE
MGSCv3712110,977,329 - 110,977,407 (+)RGD
Celera12110,936,349 - 110,936,427 (+)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629907 AgrOrtholog
Ensembl Genes ENSMUSG00000070136 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093627 ENTREZGENE
MGD MGI:3629907 ENTREZGENE
miRBase MI0004589 ENTREZGENE
NCBI Gene 751524 ENTREZGENE
PhenoGen Mir496a PhenoGen
RNAcentral URS000003BF62 RNACentral
  URS00000CE959 RNACentral
  URS000066E3E2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-27 Mir496a  microRNA 496a  Mir496  microRNA 496  Symbol and/or name change 5135510 APPROVED