Mir450b (microRNA 450b) - Rat Genome Database
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Gene: Mir450b (microRNA 450b) Mus musculus
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Symbol: Mir450b
Name: microRNA 450b
RGD ID: 1625957
MGI Page MGI
Description: Predicted to be involved in epidermal cell fate specification; epithelial cell fate commitment; and gene silencing by miRNA. Is expressed in cornea stroma and eyelid epithelium. Orthologous to human MIR450B (microRNA 450b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-450b; Mirn4; Mirn450b
RGD Orthologs
Human
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,136,874 - 52,136,955 (-)NCBIGRCm39mm39
GRCm38X53,047,997 - 53,048,078 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,047,997 - 53,048,078 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,401,174 - 50,401,255 (-)NCBIGRCm37mm9NCBIm37
CeleraX40,473,992 - 40,474,073 (-)NCBICelera
Cytogenetic MapXA5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:17369397   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:22144232   PMID:22367714   PMID:26107383  


Genomics

Comparative Map Data
Mir450b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,136,874 - 52,136,955 (-)NCBIGRCm39mm39
GRCm38X53,047,997 - 53,048,078 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,047,997 - 53,048,078 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,401,174 - 50,401,255 (-)NCBIGRCm37mm9NCBIm37
CeleraX40,473,992 - 40,474,073 (-)NCBICelera
Cytogenetic MapXA5NCBI
MIR450B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX134,540,185 - 134,540,262 (-)EnsemblGRCh38hg38GRCh38
GRCh38X134,540,185 - 134,540,262 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X133,674,215 - 133,674,292 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,501,880 - 133,501,957 (-)NCBINCBI36hg18NCBI36
CeleraX134,061,043 - 134,061,120 (-)NCBI
Cytogenetic MapXq26.3NCBI
HuRefX123,073,211 - 123,073,288 (-)NCBIHuRef
CHM1_1X133,585,965 - 133,586,042 (-)NCBICHM1_1
MIR450B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX105,177,277 - 105,177,355 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X105,177,287 - 105,177,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR450B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX110,381,587 - 110,381,666 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X110,381,587 - 110,381,666 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
13208553Wght11_mweight 11 (mouse)X1200000060000000Mouse
13208557Lgth13_mbody length 13 (mouse)X1200000060000000Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3390000056800000Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3540000057800000Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX4006835474068454Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX4006835474068454Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
1301212Bw19_mbody weight QTL 19 (mouse)Not determinedX4728804353323450Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
1300853Aggr2_maggression 2 (mouse)Not determinedX4998229053170319Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5168349871391145Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5290000090700000Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:29541
Count of gene targets:10724
Count of transcripts:18080
Interacting mature miRNAs:mmu-miR-450b-3p, mmu-miR-450b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102095
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX53,047,997 - 53,048,078 (-)Ensembl
RefSeq Acc Id: NR_030498
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X52,136,874 - 52,136,955 (-)NCBI
GRCm38X53,047,997 - 53,048,078 (-)ENTREZGENE
MGSCv37X50,401,174 - 50,401,255 (-)RGD
CeleraX40,473,992 - 40,474,073 (-)RGD
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629953 AgrOrtholog
Ensembl Genes ENSMUSG00000076050 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102095 ENTREZGENE
MGD MGI:3629953 ENTREZGENE
miRBase MI0004705 ENTREZGENE
NCBI Gene 751532 ENTREZGENE
PhenoGen Mir450b PhenoGen
RNAcentral URS00003309F8 RNACentral
  URS000056100C RNACentral
  URS000075CC1B RNACentral