Mir711 (microRNA 711) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Mir711 (microRNA 711) Mus musculus
Analyze
Symbol: Mir711
Name: microRNA 711
RGD ID: 1625953
MGI Page MGI
Description: Involved in response to oxygen levels and sensory perception of sound. Orthologous to human MIR711 (microRNA 711).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-7; mir-711; Mirn; Mirn711; mmu-mir-7; mmu-mir-711
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,798,990 - 108,799,071 (+)NCBIGRCm39mm39
GRCm389108,969,922 - 108,970,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,969,922 - 108,970,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,871,967 - 108,872,048 (+)NCBIGRCm37mm9NCBIm37
Celera9108,527,862 - 108,527,943 (+)NCBICelera
Cytogenetic Map9F2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
copper atom  (ISO)
copper(0)  (ISO)
paracetamol  (EXP)
radon atom  (ISO)
radon(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:18282110   PMID:18723672   PMID:20102707   PMID:21267068   PMID:23646144   PMID:26470728   PMID:28240307   PMID:29774773   PMID:30033153   PMID:31685802  


Genomics

Comparative Map Data
Mir711
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,798,990 - 108,799,071 (+)NCBIGRCm39mm39
GRCm389108,969,922 - 108,970,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,969,922 - 108,970,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,871,967 - 108,872,048 (+)NCBIGRCm37mm9NCBIm37
Celera9108,527,862 - 108,527,943 (+)NCBICelera
Cytogenetic Map9F2NCBI
MIR711
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl348,578,902 - 48,578,977 (-)EnsemblGRCh38hg38GRCh38
GRCh38348,578,902 - 48,578,977 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37348,616,335 - 48,616,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera348,572,077 - 48,572,152 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef348,674,663 - 48,674,738 (-)NCBIHuRef
CHM1_1348,568,645 - 48,568,720 (-)NCBICHM1_1
Mir711
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08117,711,567 - 117,711,634 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,711,567 - 117,711,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,063,312 - 117,063,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,915,709 - 108,915,776 (+)NCBICelera
Cytogenetic Map8q32NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:7996
Count of gene targets:5187
Count of transcripts:7561
Interacting mature miRNAs:mmu-miR-711
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102188
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,969,922 - 108,970,003 (+)Ensembl
RefSeq Acc Id: NR_030492
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,798,990 - 108,799,071 (+)NCBI
GRCm389108,969,922 - 108,970,003 (+)ENTREZGENE
MGSCv379108,871,967 - 108,872,048 (+)RGD
Celera9108,527,862 - 108,527,943 (+)RGD
cM Map9 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629883 AgrOrtholog
Ensembl Genes ENSMUSG00000076142 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102188 ENTREZGENE
MGD MGI:3629883 ENTREZGENE
miRBase MI0004695 ENTREZGENE
NCBI Gene 751536 ENTREZGENE
PhenoGen Mir711 PhenoGen
RNAcentral URS000061DF98 RNACentral
  URS000075D9F5 RNACentral