Mir673 (microRNA 673) - Rat Genome Database
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Gene: Mir673 (microRNA 673) Mus musculus
Analyze
Symbol: Mir673
Name: microRNA 673
RGD ID: 1625942
MGI Page MGI
Description: Is expressed in cranial ganglion; dorsal root ganglion; telencephalon; and vault of skull.
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-673; Mirn; Mirn673; mmu-mir-6; mmu-mir-673
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,538,424 - 109,538,514 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,538,424 - 109,538,514 (+)Ensembl
GRCm3812109,571,990 - 109,572,080 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,571,990 - 109,572,080 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,810,200 - 110,810,290 (+)NCBIGRCm37mm9NCBIm37
Celera12110,766,369 - 110,766,459 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:16954537   PMID:16973894   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:22614019   PMID:25858512   PMID:31397024  


Genomics

Position Markers
RH125102  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812109,571,587 - 109,571,673UniSTSGRCm38
MGSCv3712110,809,797 - 110,809,883UniSTSGRCm37
Celera12110,765,966 - 110,766,052UniSTS
Cytogenetic Map12F1UniSTS
cM Map1254.0UniSTS
PMC133956P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812109,571,433 - 109,571,702UniSTSGRCm38
MGSCv3712110,809,643 - 110,809,912UniSTSGRCm37
Celera12110,765,812 - 110,766,081UniSTS
Cytogenetic Map12F1UniSTS
cM Map1254.0UniSTS
Meg3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812109,571,413 - 109,571,700UniSTSGRCm38
MGSCv3712110,809,623 - 110,809,910UniSTSGRCm37
Celera12110,765,792 - 110,766,079UniSTS
Cytogenetic Map12F1UniSTS
cM Map1254.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:38561
Count of gene targets:15245
Count of transcripts:29489
Interacting mature miRNAs:mmu-miR-673-3p, mmu-miR-673-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102361
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12109,571,990 - 109,572,080 (+)Ensembl
RefSeq Acc Id: NR_030438
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,538,424 - 109,538,514 (+)NCBI
GRCm3812109,571,990 - 109,572,080 (+)ENTREZGENE
MGSCv3712110,810,200 - 110,810,290 (+)RGD
Celera12110,766,369 - 110,766,459 (+)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000076316 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102361 ENTREZGENE
MGD MGI:3629894 ENTREZGENE
miRBase MI0004601 ENTREZGENE
NCBI Gene 751547 ENTREZGENE
PhenoGen Mir673 PhenoGen
RNAcentral URS000019CD2B RNACentral
  URS00005FB354 RNACentral
  URS000075EDDA RNACentral