Mir148b (microRNA 148b) - Rat Genome Database
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Gene: Mir148b (microRNA 148b) Mus musculus
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Symbol: Mir148b
Name: microRNA 148b
RGD ID: 1625919
MGI Page MGI
Description: Involved in cellular response to mechanical stimulus; long-term synaptic potentiation; and sensory perception of sound. Orthologous to human MIR148B (microRNA 148b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-148b; Mirn1; Mirn148b
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,193,552 - 103,193,648 (+)NCBIGRCm39mm39
GRCm3815103,285,125 - 103,285,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,285,125 - 103,285,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715103,115,556 - 103,115,652 (+)NCBIGRCm37mm9NCBIm37
Celera15105,447,521 - 105,447,617 (+)NCBICelera
Cytogenetic Map15F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:17369397   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21068402   PMID:21267068   PMID:21822254   PMID:23646144   PMID:25858512   PMID:25959411  
PMID:27597765   PMID:28331063   PMID:28941704   PMID:30308185  


Genomics

Comparative Map Data
Mir148b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,193,552 - 103,193,648 (+)NCBIGRCm39mm39
GRCm3815103,285,125 - 103,285,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,285,125 - 103,285,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715103,115,556 - 103,115,652 (+)NCBIGRCm37mm9NCBIm37
Celera15105,447,521 - 105,447,617 (+)NCBICelera
Cytogenetic Map15F3NCBI
MIR148B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1254,337,216 - 54,337,314 (+)EnsemblGRCh38hg38GRCh38
GRCh381254,337,216 - 54,337,314 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371254,731,000 - 54,731,098 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361253,017,266 - 53,017,364 (+)NCBINCBI36hg18NCBI36
Celera1254,382,994 - 54,383,092 (+)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1251,770,194 - 51,770,292 (+)NCBIHuRef
CHM1_11254,697,702 - 54,697,800 (+)NCBICHM1_1
Mir148b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27134,421,398 - 134,421,494 (+)NCBI
Rnor_6.0 Ensembl7144,912,038 - 144,912,134 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07144,912,038 - 144,912,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07142,692,726 - 142,692,822 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7130,846,616 - 130,846,712 (+)NCBICelera
Cytogenetic Map7q36NCBI
MIR148B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl27975,131 - 975,220 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.127975,146 - 975,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR148B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,530,985 - 19,531,074 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,530,990 - 19,531,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,388,191 - 20,388,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92890759103517472Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Camk2ammu-miR-148b-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI21068402
Itga5mmu-miR-148b-3pOncomiRDBexternal_infoNANA23233531
Cckbrmmu-miR-148b-3pOncomiRDBexternal_infoNANA22020560
Mitfmmu-miR-148b-3pOncomiRDBexternal_infoNANA20644734

Predicted Targets
Summary Value
Count of predictions:25277
Count of gene targets:9853
Count of transcripts:16531
Interacting mature miRNAs:mmu-miR-148b-3p, mmu-miR-148b-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15103,285,125 - 103,285,221 (+)Ensembl
RefSeq Acc Id: NR_029766
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915103,193,552 - 103,193,648 (+)NCBI
GRCm3815103,285,125 - 103,285,221 (+)ENTREZGENE
MGSCv3715103,115,556 - 103,115,652 (+)RGD
Celera15105,447,521 - 105,447,617 (+)RGD
cM Map15 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3618734 AgrOrtholog
Ensembl Genes ENSMUSG00000065560 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083626 ENTREZGENE
MGD MGI:3618734 ENTREZGENE
miRBase MI0000617 ENTREZGENE
NCBI Gene 724064 ENTREZGENE
PhenoGen Mir148b PhenoGen
RNAcentral URS0000113EBB RNACentral
  URS0000521626 RNACentral
  URS000075C734 RNACentral