Ccdc138 (coiled-coil domain containing 138) - Rat Genome Database

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Gene: Ccdc138 (coiled-coil domain containing 138) Mus musculus
Analyze
Symbol: Ccdc138
Name: coiled-coil domain containing 138
RGD ID: 1625909
MGI Page MGI
Description: Orthologous to human CCDC138 (coiled-coil domain containing 138); INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; carbon nanotube.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 6230424H07Rik; BC042726; coiled-coil domain-containing protein 138
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,333,523 - 58,412,066 (+)NCBIGRCm39mm39
GRCm39 Ensembl1058,333,770 - 58,412,066 (+)Ensembl
GRCm381058,497,699 - 58,576,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,497,948 - 58,576,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,960,685 - 58,038,992 (+)NCBIGRCm37mm9NCBIm37
MGSCv361057,893,327 - 57,971,601 (+)NCBImm8
MGSCv361058,477,854 - 58,557,364 (+)NCBImm8
Cytogenetic Map10B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:32325033  


Genomics

Comparative Map Data
Ccdc138
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,333,523 - 58,412,066 (+)NCBIGRCm39mm39
GRCm39 Ensembl1058,333,770 - 58,412,066 (+)Ensembl
GRCm381058,497,699 - 58,576,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,497,948 - 58,576,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,960,685 - 58,038,992 (+)NCBIGRCm37mm9NCBIm37
MGSCv361057,893,327 - 57,971,601 (+)NCBImm8
MGSCv361058,477,854 - 58,557,364 (+)NCBImm8
Cytogenetic Map10B4NCBI
CCDC138
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2108,786,757 - 108,885,477 (+)EnsemblGRCh38hg38GRCh38
GRCh382108,786,733 - 108,885,485 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372109,403,206 - 109,501,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,769,651 - 108,859,279 (+)NCBINCBI36hg18NCBI36
Celera2103,713,196 - 103,802,791 (+)NCBI
Cytogenetic Map2q13NCBI
HuRef2103,001,686 - 103,091,278 (+)NCBIHuRef
CHM1_12109,407,534 - 109,497,317 (+)NCBICHM1_1
Ccdc138
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22026,493,624 - 26,572,367 (+)NCBI
Rnor_6.0 Ensembl2028,078,500 - 28,157,071 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02028,076,784 - 28,158,053 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02029,897,919 - 29,975,893 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,181,926 - 37,269,631 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2027,943,945 - 28,023,299 (+)NCBICelera
Cytogenetic Map20q11NCBI
Ccdc138
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,251,682 - 12,305,973 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547012,249,279 - 12,305,099 (+)NCBIChiLan1.0ChiLan1.0
CCDC138
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A110,041,114 - 110,128,383 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A110,041,000 - 110,128,234 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A95,030,440 - 95,126,627 (+)NCBIMhudiblu_PPA_v0panPan3
CCDC138
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11034,976,341 - 35,086,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1034,976,670 - 35,086,297 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1034,899,699 - 35,008,391 (-)NCBI
ROS_Cfam_1.01035,828,597 - 35,938,058 (-)NCBI
UMICH_Zoey_3.11035,558,076 - 35,667,578 (-)NCBI
UNSW_CanFamBas_1.01035,840,305 - 35,950,700 (-)NCBI
UU_Cfam_GSD_1.01036,031,906 - 36,142,309 (-)NCBI
Ccdc138
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,000,625 - 92,061,913 (-)NCBI
SpeTri2.0NW_004936829335,977 - 397,252 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC138
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,470,706 - 47,523,536 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,470,649 - 47,525,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,632,032 - 49,688,845 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC138
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11412,320,653 - 12,412,191 (+)NCBI
ChlSab1.1 Ensembl1412,320,719 - 12,411,855 (+)Ensembl
Ccdc138
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474911,924,869 - 11,974,072 (+)NCBI

Position Markers
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302092Ath11_matherosclerosis 11 (mouse)Not determined10620194558857699Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102171529368255809Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102984430763844387Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103109840365098534Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103170104065701188Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103390000071000000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4140150475401504Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104570000069300000Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104640000069400000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104809840370276821Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
12904011Cfq11_mconditioned fear QTL 11 (mouse)105660406061105062Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:71
Interacting mature miRNAs:77
Transcripts:ENSMUST00000036576
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001162956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC078930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000036576   ⟹   ENSMUSP00000043040
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,497,948 - 58,576,244 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,498,205 - 58,502,372 (+)Ensembl
RefSeq Acc Id: NM_001162956   ⟹   NP_001156428
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,759 - 58,412,066 (+)NCBI
GRCm381058,497,937 - 58,576,244 (+)NCBI
MGSCv371057,960,685 - 58,038,992 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514273   ⟹   XP_006514336
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,767 - 58,412,066 (+)NCBI
GRCm381058,497,702 - 58,576,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245352   ⟹   XP_030101212
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,525 - 58,412,066 (+)NCBI
GRCm381058,497,702 - 58,576,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245353   ⟹   XP_030101213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,525 - 58,412,066 (+)NCBI
GRCm381058,497,702 - 58,576,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156074   ⟹   XP_036011967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,787 - 58,412,066 (+)NCBI
RefSeq Acc Id: XM_036156075   ⟹   XP_036011968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,525 - 58,412,066 (+)NCBI
RefSeq Acc Id: XM_036156076   ⟹   XP_036011969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,777 - 58,412,066 (+)NCBI
RefSeq Acc Id: XR_004936298
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,753 - 58,412,066 (+)NCBI
RefSeq Acc Id: XR_004936299
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,523 - 58,412,066 (+)NCBI
RefSeq Acc Id: XR_004936300
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,767 - 58,412,066 (+)NCBI
RefSeq Acc Id: XR_004936301
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,333,777 - 58,412,066 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001156428   ⟸   NM_001162956
- UniProtKB: Q0VF22 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514336   ⟸   XM_006514273
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030101213   ⟸   XM_030245353
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030101212   ⟸   XM_030245352
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000043040   ⟸   ENSMUST00000036576
RefSeq Acc Id: XP_036011968   ⟸   XM_036156075
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011969   ⟸   XM_036156076
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011967   ⟸   XM_036156074
- Peptide Label: isoform X2

Promoters
RGD ID:6819081
Promoter ID:MM_KWN:4196
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001162956,   UC007FDG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,959,711 - 57,961,372 (+)MPROMDB
RGD ID:8672018
Promoter ID:EPDNEW_M14040
Type:initiation region
Name:Ccdc138_1
Description:Mus musculus coiled-coil domain containing 138 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381058,497,959 - 58,498,019EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923388 AgrOrtholog
Ensembl Genes ENSMUSG00000038010 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000043040 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000036576 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro CCDC138 UniProtKB/Swiss-Prot
KEGG Report mmu:76138 UniProtKB/Swiss-Prot
MGD MGI:1923388 ENTREZGENE
NCBI Gene 76138 ENTREZGENE
PANTHER PTHR34523 UniProtKB/Swiss-Prot
PhenoGen Ccdc138 PhenoGen
UniProt CC138_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8CG93 UniProtKB/Swiss-Prot