Mir488 (microRNA 488) - Rat Genome Database
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Gene: Mir488 (microRNA 488) Mus musculus
Analyze
Symbol: Mir488
Name: microRNA 488
RGD ID: 1625890
MGI Page MGI
Description: Is expressed in metanephros. Orthologous to human MIR488 (microRNA 488).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-488; Mirn; Mirn488; mmu-mir-4; mmu-mir-488
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,333,195 - 158,333,303 (+)NCBIGRCm39mm39
GRCm39 Ensembl1158,333,195 - 158,333,303 (+)Ensembl
GRCm381158,505,625 - 158,505,733 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,505,625 - 158,505,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,435,756 - 160,435,864 (+)NCBIGRCm37mm9NCBIm37
Celera1160,900,459 - 160,900,567 (+)NCBICelera
Cytogenetic Map1H1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:21518438   PMID:22144232   PMID:30575941   PMID:30729701  


Genomics

Comparative Map Data
Mir488
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,333,195 - 158,333,303 (+)NCBIGRCm39mm39
GRCm39 Ensembl1158,333,195 - 158,333,303 (+)Ensembl
GRCm381158,505,625 - 158,505,733 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,505,625 - 158,505,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,435,756 - 160,435,864 (+)NCBIGRCm37mm9NCBIm37
Celera1160,900,459 - 160,900,567 (+)NCBICelera
Cytogenetic Map1H1NCBI
MIR488
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1177,029,363 - 177,029,445 (-)EnsemblGRCh38hg38GRCh38
GRCh381177,029,363 - 177,029,445 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371176,998,499 - 176,998,581 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,265,121 - 175,265,203 (-)NCBINCBI36hg18NCBI36
Celera1150,108,504 - 150,108,586 (-)NCBI
Cytogenetic Map1q25.2NCBI
HuRef1148,224,993 - 148,225,075 (-)NCBIHuRef
CHM1_11178,422,539 - 178,422,621 (-)NCBICHM1_1
Mir488
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21370,683,064 - 70,683,142 (+)NCBI
Rnor_6.0 Ensembl1376,198,593 - 76,198,671 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01376,198,593 - 76,198,671 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01381,112,954 - 81,113,032 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1370,496,620 - 70,496,698 (+)NCBICelera
Cytogenetic Map13q22NCBI
MIR488
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl722,597,953 - 22,598,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1722,597,953 - 22,598,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195600000162200000Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112081092168358833Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121800000165000000Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122100000165000000Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129255120163255255Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131228571165311895Mouse
14746980Manh50_mmandible shape 50 (mouse)1134255813168255813Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135919071169919261Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1136002150170002264Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136334204170334348Mouse
1300837Vmbic1_mventral midbrain iron content 1 (mouse)Not determined1139624618173624738Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139624618173624738Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139774467173774646Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139774467173774646Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139774467173774646Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139774467173774646Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139774467173774646Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139774467173774646Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139774467173774646Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139774467173774646Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141267440175267586Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141405603175405702Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141405603175405702Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141405603175405702Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141405603175405702Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142661973176662164Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143457095177457233Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144621573178621573Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144703778178704023Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145250061179250061Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145317638179317756Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1147032461167758653Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147249520169211344Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147249520171804689Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147249520183092234Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147391821181391821Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147391821181391821Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9148047933182048047Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1148047933182048047Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150730586159479894Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153681660175641372Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1300611Tlln_mtail length (mouse)Not determined1155962068159562802Mouse
4141075Bmd1a_mbone mineral density 1a (mouse)Not determined1155962068162317756Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156774467168358833Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156774467168358833Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156774467170976071Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156774467176435127Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156774467189571420Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156774467189571420Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Aregmmu-miR-488-5pOncomiRDBexternal_infoNANA21710544

Predicted Targets
Summary Value
Count of predictions:18887
Count of gene targets:7962
Count of transcripts:12784
Interacting mature miRNAs:mmu-miR-488-3p, mmu-miR-488-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1158,505,625 - 158,505,733 (+)Ensembl
RefSeq Acc Id: NR_030441
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,333,195 - 158,333,303 (+)NCBI
GRCm381158,505,625 - 158,505,733 (+)ENTREZGENE
MGSCv371160,435,756 - 160,435,864 (+)RGD
Celera1160,900,459 - 160,900,567 (+)RGD
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629597 AgrOrtholog
Ensembl Genes ENSMUSG00000070103 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093595 ENTREZGENE
MGD MGI:3629597 ENTREZGENE
miRBase MI0004633 ENTREZGENE
NCBI Gene 735253 ENTREZGENE
PhenoGen Mir488 PhenoGen
RNAcentral URS00002D77C3 RNACentral
  URS000050BE38 RNACentral
  URS000075CF07 RNACentral