Mir709 (microRNA 709) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mir709 (microRNA 709) Mus musculus
Analyze
Symbol: Mir709
Name: microRNA 709
RGD ID: 1625877
MGI Page MGI
Description: Acts upstream of or within cellular response to forskolin; cellular response to inorganic substance; and response to muscle activity. Is expressed in urogenital sinus.
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-709; Mirn; Mirn709; mmu-mir-7; mmu-mir-709
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,812,728 - 84,812,815 (+)NCBIGRCm39mm39
GRCm39 Ensembl884,812,728 - 84,812,815 (+)Ensembl
GRCm38884,086,099 - 84,086,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,086,099 - 84,086,186 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,609,998 - 86,610,085 (+)NCBIGRCm37mm9NCBIm37
Celera888,382,010 - 88,382,097 (+)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
malaria  (IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:19029807   PMID:19470377   PMID:20086200   PMID:21037258   PMID:21267068   PMID:21822254   PMID:21862971   PMID:21993888   PMID:25038456   PMID:25818666  
PMID:26743462   PMID:27232654   PMID:29042455   PMID:32442560  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Akt1mmu-miR-709Mirtarbaseexternal_infoLuciferase reporter assayFunctional MTI21464222
Ctcflmmu-miR-709Mirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI19029807

Predicted Targets
Summary Value
Count of predictions:30682
Count of gene targets:12285
Count of transcripts:21521
Interacting mature miRNAs:mmu-miR-709
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102190
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,812,728 - 84,812,815 (+)Ensembl
GRCm38.p6 Ensembl884,086,099 - 84,086,186 (+)Ensembl
RefSeq Acc Id: NR_030490
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,812,728 - 84,812,815 (+)NCBI
GRCm38884,086,099 - 84,086,186 (+)ENTREZGENE
MGSCv37886,609,998 - 86,610,085 (+)RGD
Celera888,382,010 - 88,382,097 (+)RGD
cM Map8 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000076144 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102190 ENTREZGENE
MGD MGI:3629717 ENTREZGENE
miRBase MI0004693 ENTREZGENE
NCBI Gene 735271 ENTREZGENE
PhenoGen Mir709 PhenoGen
RNAcentral URS0000533C81 RNACentral
  URS000075E062 RNACentral