Mir499 (microRNA 499) - Rat Genome Database
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Gene: Mir499 (microRNA 499) Mus musculus
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Symbol: Mir499
Name: microRNA 499
RGD ID: 1625875
MGI Page MGI
Description: Is expressed in several structures, including Meckel's cartilage; brain; diaphragm; heart ventricle; and limb. Orthologous to human MIR499A (microRNA 499a).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-499; Mirn; Mirn499; mmu-mir-4; mmu-mir-499
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,464,800 - 155,464,878 (+)NCBIGRCm39mm39
GRCm39 Ensembl2155,464,800 - 155,464,878 (+)Ensembl
GRCm382155,622,880 - 155,622,958 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,622,880 - 155,622,958 (+)EnsemblGRCm38mm10GRCm38
MGSCv372155,448,616 - 155,448,694 (+)NCBIGRCm37mm9NCBIm37
Celera2161,555,145 - 161,555,223 (+)NCBICelera
Cytogenetic Map2H1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:17604727   PMID:19147652   PMID:19922871   PMID:20154144   PMID:20215419   PMID:20413612   PMID:21030712   PMID:21037258   PMID:21267068   PMID:21573063  
PMID:21822254   PMID:22374132   PMID:22638570   PMID:22752967   PMID:23625950   PMID:23676496   PMID:24040263   PMID:25534971   PMID:26279439   PMID:27506764   PMID:29899331   PMID:30097922  
PMID:30230540   PMID:30419283   PMID:31307168  


Genomics

Comparative Map Data
Mir499
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,464,800 - 155,464,878 (+)NCBIGRCm39mm39
GRCm39 Ensembl2155,464,800 - 155,464,878 (+)Ensembl
GRCm382155,622,880 - 155,622,958 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,622,880 - 155,622,958 (+)EnsemblGRCm38mm10GRCm38
MGSCv372155,448,616 - 155,448,694 (+)NCBIGRCm37mm9NCBIm37
Celera2161,555,145 - 161,555,223 (+)NCBICelera
Cytogenetic Map2H1NCBI
MIR499A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2034,990,376 - 34,990,497 (+)EnsemblGRCh38hg38GRCh38
GRCh382034,990,376 - 34,990,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372033,578,179 - 33,578,300 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,041,839 - 33,041,960 (+)NCBINCBI36hg18NCBI36
Celera2030,327,269 - 30,327,390 (+)NCBI
Cytogenetic Map20q11.22NCBI
HuRef2030,356,542 - 30,356,663 (+)NCBIHuRef
CHM1_12033,479,374 - 33,479,495 (+)NCBICHM1_1
Mir499a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23144,110,469 - 144,110,533 (+)NCBI
Rnor_6.0 Ensembl3151,138,862 - 151,138,926 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03151,138,862 - 151,138,926 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03157,506,669 - 157,506,733 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3142,834,661 - 142,834,725 (+)NCBICelera
Cytogenetic Map3q42NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118758772160769245Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118758772160769245Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118758772160769245Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118758772160769245Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2123041095157041211Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2124095391158095504Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124600000168400000Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127822099161822198Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127822099161822198Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129500000163500000Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132182239166182410Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133302991167303138Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133302991167303138Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135590624173607823Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135857301169857441Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135857301169857441Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135857301169857441Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135857301169857441Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2139124680173124809Mouse
11353826Bdln10_mbody length 10 (mouse)2140599562174599562Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142586427176586530Mouse
12801461Intim1_mintima modifier 1 (mouse)2142586427176586530Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142751556178800659Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143931525160461088Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143931525165823099Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143931525169276004Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144673941181254801Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145355029179355165Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145386799179386921Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145676855179677006Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148396284182113224Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148822973182113224Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149394987182113224Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2150146982182113224Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150370301182113224Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150370301182113224Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150370301182113224Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151799021162895154Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151799021162895154Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151799021162895154Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151799021164277226Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151867353174547331Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151936377182113224Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2152000000160000000Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152487900182113224Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152857301162355165Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152857301169276004Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154711297159586530Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:17140
Count of gene targets:7391
Count of transcripts:11835
Interacting mature miRNAs:mmu-miR-499-3p, mmu-miR-499-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102357
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2155,622,880 - 155,622,958 (+)Ensembl
RefSeq Acc Id: NR_030757
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,464,800 - 155,464,878 (+)NCBI
GRCm382155,622,880 - 155,622,958 (+)ENTREZGENE
MGSCv372155,448,616 - 155,448,694 (+)RGD
Celera2161,555,145 - 161,555,223 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6879362
Promoter ID:EPDNEW_M3132
Type:single initiation site
Name:Mir499_1
Description:Mus musculus microRNA 499 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382155,622,953 - 155,623,013EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629633 AgrOrtholog
Ensembl Genes ENSMUSG00000076312 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102357 ENTREZGENE
MGD MGI:3629633 ENTREZGENE
miRBase MI0004676 ENTREZGENE
NCBI Gene 735275 ENTREZGENE
PhenoGen Mir499 PhenoGen
RNAcentral URS00000C7662 RNACentral
  URS00001105D0 RNACentral
  URS000075C202 RNACentral