Mir708 (microRNA 708) - Rat Genome Database

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Gene: Mir708 (microRNA 708) Mus musculus
Analyze
Symbol: Mir708
Name: microRNA 708
RGD ID: 1625867
MGI Page MGI
Description: Acts upstream of or within cellular response to amino acid stimulus and cellular response to estrogen stimulus. Part of RISC complex. Is expressed in cerebral cortex. Orthologous to human MIR708 (microRNA 708).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mirn; Mirn708; mmu-mir-7; mmu-mir-708
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39795,898,631 - 95,898,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl795,898,631 - 95,898,739 (+)EnsemblGRCm39 Ensembl
GRCm38796,249,424 - 96,249,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl796,249,424 - 96,249,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv377103,397,934 - 103,398,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7E1NCBI
cM Map752.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:16973894   PMID:17604727   PMID:18791161   PMID:20215419   PMID:20413612   PMID:20548288   PMID:21267068   PMID:21402790   PMID:21822254   PMID:23185045  
PMID:28304372   PMID:28970284   PMID:30416072   PMID:30578296   PMID:30814928   PMID:31962101   PMID:32650805   PMID:32683666   PMID:34624438   PMID:34934045  


Genomics

Comparative Map Data
Mir708
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39795,898,631 - 95,898,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl795,898,631 - 95,898,739 (+)EnsemblGRCm39 Ensembl
GRCm38796,249,424 - 96,249,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl796,249,424 - 96,249,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv377103,397,934 - 103,398,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7E1NCBI
cM Map752.54NCBI
MIR708
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,402,022 - 79,402,109 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,402,022 - 79,402,109 (-)EnsemblGRCh38hg38GRCh38
GRCh371179,113,066 - 79,113,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361178,790,713 - 78,790,800 (-)NCBINCBI36Build 36hg18NCBI36
Celera1176,422,187 - 76,422,274 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1175,409,416 - 75,409,503 (-)NCBIHuRef
CHM1_11178,995,903 - 78,995,990 (-)NCBICHM1_1
T2T-CHM13v2.01179,336,291 - 79,336,378 (-)NCBIT2T-CHM13v2.0
Mir708
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81160,011,158 - 160,011,245 (+)NCBIGRCr8
mRatBN7.21150,599,876 - 150,599,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,599,876 - 150,599,963 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1158,583,701 - 158,583,788 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,763,871 - 165,763,958 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01158,637,325 - 158,637,412 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,221,246 - 161,221,333 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,221,246 - 161,221,333 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,436,243 - 167,436,330 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1148,707,350 - 148,707,437 (+)NCBICelera
Cytogenetic Map1q32NCBI
MIR708
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12119,542,577 - 19,542,645 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2119,542,577 - 19,542,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2119,437,542 - 19,437,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02119,738,865 - 19,738,933 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2119,738,865 - 19,738,933 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12119,524,078 - 19,524,146 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02119,737,931 - 19,737,999 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02119,661,690 - 19,661,758 (+)NCBIUU_Cfam_GSD_1.0
MIR708
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl913,780,171 - 13,780,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1913,780,171 - 13,780,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2915,120,477 - 15,120,556 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Mir708
2 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:24558
Count of gene targets:10527
Count of transcripts:17682
Interacting mature miRNAs:mmu-miR-708-3p, mmu-miR-708-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
27226792Feml7_mfemur length 7, 5 week (mouse)78614920898949207Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_030489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC160527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000102189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl795,898,631 - 95,898,739 (+)Ensembl
GRCm38.p6 Ensembl796,249,424 - 96,249,532 (+)Ensembl
RefSeq Acc Id: NR_030489
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39795,898,631 - 95,898,739 (+)NCBI
GRCm38796,249,424 - 96,249,532 (+)ENTREZGENE
MGSCv377103,397,934 - 103,398,042 (+)RGD
cM Map7 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3629686 AgrOrtholog
Ensembl Genes ENSMUSG00000076143 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102189 ENTREZGENE
MGD MGI:3629686 ENTREZGENE
miRBase MI0004692 ENTREZGENE
NCBI Gene 735284 ENTREZGENE
PhenoGen Mir708 PhenoGen
RNAcentral URS000019D79B RNACentral
  URS000049EEDF RNACentral
  URS000075EA54 RNACentral