Rpl34-ps1 (ribosomal protein L34, pseudogene 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rpl34-ps1 (ribosomal protein L34, pseudogene 1) Mus musculus
Analyze
No known orthologs.
Symbol: Rpl34-ps1
Name: ribosomal protein L34, pseudogene 1
RGD ID: 1625321
MGI Page MGI
Description: INTERACTS WITH benzo[a]pyrene; folic acid
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: EG619547; ENSMUSG00000068396; Gm10239; MGC103270; MGC117759; ribosomal protein L34 pseudogene
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
NCBI Annotation Information: Note: It is unclear whether this locus is a functional gene or a pseudogene. However, the locus has transcript support and an intact open reading frame so it is represented as protein-coding in Gene and RefSeq. [03 Dec 2010]
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,101,573 - 71,101,985 (+)NCBIGRCm39mm39
GRCm39 Ensembl3130,520,480 - 130,524,047 (-)Ensembl
GRCm39 Ensembl671,101,594 - 71,101,947 (+)Ensembl
GRCm38671,124,589 - 71,125,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3130,726,831 - 130,730,398 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl671,124,610 - 71,124,963 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,074,588 - 71,074,995 (+)NCBIGRCm37mm9NCBIm37
MGSCv36671,054,173 - 71,054,628 (-)NCBImm8
MGSCv36671,989,394 - 71,989,849 (-)NCBImm8
Celera5105,638,704 - 105,639,057 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12477932   PMID:26336360   PMID:30196744   PMID:30457570   PMID:30562941  


Genomics

Position Markers
24.MMHAP9FLH3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383130,729,760 - 130,729,921UniSTSGRCm38
MGSCv373130,432,678 - 130,432,839UniSTSGRCm37
Celera3137,245,548 - 137,245,709UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map3G3UniSTS
Whitehead_YAC3 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:88
Interacting mature miRNAs:93
Transcripts:ENSMUST00000072323, ENSMUST00000121998
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000062601   ⟹   ENSMUSP00000086614
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,726,831 - 130,730,337 (-)Ensembl
RefSeq Acc Id: ENSMUST00000079085   ⟹   ENSMUSP00000078092
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,726,839 - 130,730,398 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121998
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,124,610 - 71,124,963 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133802   ⟹   ENSMUSP00000142951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,728,332 - 130,730,334 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,726,864 - 130,730,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196202   ⟹   ENSMUSP00000142486
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,726,876 - 130,730,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199001
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,726,834 - 130,727,406 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199911
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,728,567 - 130,730,347 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200517   ⟹   ENSMUSP00000143752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3130,728,838 - 130,730,346 (-)Ensembl
RefSeq Acc Id: NM_001199350   ⟹   NP_001186279
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,101,573 - 71,101,985 (+)NCBI
GRCm38671,124,589 - 71,125,001 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001186279 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00361 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001186279   ⟸   NM_001199350
- UniProtKB: Q9D1R9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000078092   ⟸   ENSMUST00000079085
RefSeq Acc Id: ENSMUSP00000086614   ⟸   ENSMUST00000062601
RefSeq Acc Id: ENSMUSP00000142951   ⟸   ENSMUST00000133802
RefSeq Acc Id: ENSMUSP00000142486   ⟸   ENSMUST00000196202
RefSeq Acc Id: ENSMUSP00000143752   ⟸   ENSMUST00000200517

Promoters
RGD ID:6889946
Promoter ID:EPDNEW_M8424
Type:multiple initiation site
Name:Rpl34-ps1_1
Description:Mus musculus ribosomal protein L34, pseudogene 1 (Rpl34-ps1),mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,124,577 - 71,124,637EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000062006 Ensembl, UniProtKB/Swiss-Prot
  ENSMUSG00000068396 Ensembl, ENTREZGENE
Ensembl Protein ENSMUSP00000078092 UniProtKB/Swiss-Prot
  ENSMUSP00000086614 UniProtKB/Swiss-Prot
  ENSMUSP00000142486 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000062601 UniProtKB/Swiss-Prot
  ENSMUST00000079085 UniProtKB/Swiss-Prot
  ENSMUST00000121998 ENTREZGENE
  ENSMUST00000196202 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.1800.40 UniProtKB/Swiss-Prot
InterPro Ribosomal_L34Ae UniProtKB/Swiss-Prot
  Ribosomal_L34Ae_sf UniProtKB/Swiss-Prot
  Ribosomal_L34e_CS UniProtKB/Swiss-Prot
KEGG Report mmu:619547 UniProtKB/Swiss-Prot
  mmu:68436 UniProtKB/Swiss-Prot
MGD MGI:3704270 ENTREZGENE
NCBI Gene 619547 ENTREZGENE
Pfam Ribosomal_L34e UniProtKB/Swiss-Prot
PhenoGen Rpl34-ps1 PhenoGen
PRINTS RIBOSOMALL34 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_L34E UniProtKB/Swiss-Prot
UniProt Q9D1R9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q497V4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl34-ps1  ribosomal protein L34, pseudogene 1  Gm10239  predicted gene 10239  Symbol and/or name change 5135510 APPROVED