DPY19L2P4 (DPY19L2 pseudogene 4) - Rat Genome Database

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Gene: DPY19L2P4 (DPY19L2 pseudogene 4) Homo sapiens
Analyze
Symbol: DPY19L2P4
Name: DPY19L2 pseudogene 4
RGD ID: 1625100
HGNC Page HGNC:22176
Description: INTERACTS WITH aflatoxin B1; benzo[a]pyrene; bisphenol A
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: DKFZp686L2199; FLJ25893; MGC39769; MGC48509
Related Functional Gene: DPY19L2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38790,119,400 - 90,125,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl790,119,358 - 90,128,866 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl790,119,539 - 90,124,163 (+)EnsemblGRCh38hg38GRCh38
GRCh37789,748,714 - 89,754,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36789,586,650 - 89,592,850 (+)NCBINCBI36Build 36hg18NCBI36
Celera784,452,985 - 84,459,173 (+)NCBICelera
Cytogenetic Map7q21.13NCBI
HuRef784,359,476 - 84,365,665 (+)NCBIHuRef
CHM1_1789,678,531 - 89,684,730 (+)NCBICHM1_1
T2T-CHM13v2.0791,369,872 - 91,376,060 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2789,079,482 - 89,085,682 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16526957   PMID:21832049   PMID:25130324   PMID:33961781  


Genomics

Variants

.
Variants in DPY19L2P4
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:260
Interacting mature miRNAs:268
Transcripts:ENST00000435862, ENST00000479881, ENST00000497063
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH98411  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37789,753,440 - 89,753,578UniSTSGRCh37
GRCh37735,220,924 - 35,221,062UniSTSGRCh37
Build 36735,187,449 - 35,187,587RGDNCBI36
Celera735,205,617 - 35,205,755RGD
Celera784,457,699 - 84,457,837UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map12q14.2UniSTS
HuRef735,102,012 - 35,102,150UniSTS
HuRef784,364,191 - 84,364,329UniSTS
CRA_TCAGchr7v2735,260,003 - 35,260,141UniSTS
CRA_TCAGchr7v2789,084,208 - 89,084,346UniSTS
GeneMap99-GB4 RH Map7473.12UniSTS
SHGC-33647  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map7q21.13UniSTS
GeneMap99-G3 RH Map7835.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 31 1 4 1 1 2 259 1 334 5
Low 400 877 1169 41 83 42 631 522 2914 285 697 943 2 36 346 1
Below cutoff 1772 1325 241 279 562 143 2771 1182 514 106 339 555 141 1042 1762 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000479881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl790,119,539 - 90,124,163 (+)Ensembl
RefSeq Acc Id: ENST00000497063
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl790,119,400 - 90,125,600 (+)Ensembl
RefSeq Acc Id: ENST00000690969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl790,119,414 - 90,122,325 (+)Ensembl
RefSeq Acc Id: ENST00000691157
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl790,119,358 - 90,128,866 (+)Ensembl
RefSeq Acc Id: ENST00000693025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl790,119,391 - 90,128,859 (+)Ensembl
RefSeq Acc Id: ENST00000693131
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl790,119,400 - 90,125,601 (+)Ensembl
RefSeq Acc Id: NR_003551
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38790,119,400 - 90,125,600 (+)NCBI
GRCh37789,748,714 - 89,754,914 (+)RGD
Build 36789,586,650 - 89,592,850 (+)NCBI Archive
Celera784,452,985 - 84,459,173 (+)RGD
HuRef784,359,476 - 84,365,665 (+)ENTREZGENE
CHM1_1789,678,531 - 89,684,730 (+)NCBI
T2T-CHM13v2.0791,369,872 - 91,376,060 (+)NCBI
CRA_TCAGchr7v2789,079,482 - 89,085,682 (+)ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC05405 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC DPY19L2P4 COSMIC
Ensembl Genes ENSG00000235436 Ensembl
  ENSG00000291119 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000497063 ENTREZGENE
GTEx ENSG00000235436 GTEx
  ENSG00000291119 GTEx
HGNC ID HGNC:22176 ENTREZGENE
Human Proteome Map DPY19L2P4 Human Proteome Map
NCBI Gene 442523 ENTREZGENE
PharmGKB PA142671953 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-17 DPY19L2P4  DPY19L2 pseudogene 4    dpy-19-like 2 pseudogene 4 (C. elegans)  Symbol and/or name change 5135510 APPROVED