Gm5168 (predicted gene 5168) - Rat Genome Database

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Gene: Gm5168 (predicted gene 5168) Mus musculus
Analyze
No known orthologs.
Symbol: Gm5168
Name: predicted gene 5168
RGD ID: 1624950
MGI Page MGI
Description: Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG382275; MGC118210; uncharacterized protein LOC382275
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X25,983,498 - 26,006,341 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX25,983,514 - 26,006,341 (-)EnsemblGRCm39 Ensembl
GRCm38X26,028,198 - 26,051,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX26,028,214 - 26,051,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X25,455,340 - 25,478,167 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X24,965,050 - 24,987,877 (-)NCBIMGSCv36mm8
Cytogenetic MapXA2NCBI
cM MapX18.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21873635  


Genomics

Variants

.
Variants in Gm5168
47 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:92
Interacting mature miRNAs:92
Transcripts:ENSMUST00000089165, ENSMUST00000168002
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse

Markers in Region
mXmr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
Cytogenetic MapXA3.2UniSTS
Cytogenetic MapXA3.1UniSTS
Cytogenetic MapXA5UniSTS
Slx  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
Cytogenetic MapXA3.2UniSTS
Cytogenetic MapXA3.1UniSTS
Cytogenetic MapXA5UniSTS
cM MapX30.06UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089165   ⟹   ENSMUSP00000086568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX25,983,514 - 26,006,341 (-)Ensembl
GRCm38.p6 EnsemblX26,028,214 - 26,051,041 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168002   ⟹   ENSMUSP00000127894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX25,983,617 - 26,004,758 (-)Ensembl
GRCm38.p6 EnsemblX26,028,317 - 26,049,458 (-)Ensembl
RefSeq Acc Id: NM_001025607   ⟹   NP_001020778
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X25,983,498 - 26,006,341 (-)NCBI
GRCm38X26,028,198 - 26,051,041 (-)NCBI
MGSCv37X25,455,340 - 25,478,167 (-)RGD
cM MapX ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001020778 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000086568
  ENSMUSP00000086568.3
  ENSMUSP00000127894.3
Reference Protein Sequences
RefSeq Acc Id: NP_001020778   ⟸   NM_001025607
- UniProtKB: Q4KL04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000086568   ⟸   ENSMUST00000089165
RefSeq Acc Id: ENSMUSP00000127894   ⟸   ENSMUST00000168002
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KL04-F1-model_v2 AlphaFold Q4KL04 1-211 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000079655 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089165 ENTREZGENE
  ENSMUST00000089165.9 UniProtKB/TrEMBL
  ENSMUST00000168002.3 UniProtKB/TrEMBL
InterPro Cor1/Xlr/Xmr UniProtKB/TrEMBL
KEGG Report mmu:382275 UniProtKB/TrEMBL
MGD MGI:3703318 ENTREZGENE
NCBI Gene 382275 ENTREZGENE
PANTHER EG546282 PROTEIN-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/TrEMBL
PhenoGen Gm5168 PhenoGen
UniProt Q4KL04 ENTREZGENE, UniProtKB/TrEMBL