Gm10638 (predicted gene 10638) - Rat Genome Database
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Gene: Gm10638 (predicted gene 10638) Mus musculus
Analyze
Symbol: Gm10638
Name: predicted gene 10638
RGD ID: 1624945
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: ENSMUSG00000074178
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39887,472,327 - 87,473,688 (+)NCBIGRCm39mm39
GRCm38886,745,699 - 86,747,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl886,745,453 - 86,748,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv37889,269,598 - 89,270,959 (+)NCBIGRCm37mm9NCBIm37
MGSCv36889,632,559 - 89,638,521 (+)NCBImm8
Celera891,011,738 - 91,013,121 (+)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21062905  


Genomics

Position Markers
AI853500  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38886,746,401 - 86,746,508UniSTSGRCm38
MGSCv37889,270,300 - 89,270,407UniSTSGRCm37
Cytogenetic Map8C3UniSTS
cM Map838.5UniSTS
Whitehead/MRC_RH81028.55UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined885716921119717069Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined885716921119717069Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined885716921119717069Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:131
Interacting mature miRNAs:135
Transcripts:ENSMUST00000098532
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098532
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl886,745,699 - 86,746,603 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238340
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl886,745,453 - 86,748,655 (+)Ensembl
RefSeq Acc Id: NR_027829
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39887,472,327 - 87,473,688 (+)NCBI
GRCm38886,745,699 - 86,747,060 (+)ENTREZGENE
MGSCv37889,269,598 - 89,270,959 (+)RGD
Celera891,011,738 - 91,013,121 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE21488 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:15093474
Promoter ID:EPDNEWNC_M1388
Type:single initiation site
Name:Gm10638_1
Description:predicted gene 10638 [Source:MGI Symbol;Acc:MGI:3704316]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38886,745,459 - 86,745,519EPDNEWNC
RGD ID:8667783
Promoter ID:EPDNEW_M11923
Type:initiation region
Name:Gm10638_1
Description:Mus musculus predicted gene 10638 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38886,745,686 - 86,745,746EPDNEW
RGD ID:15093473
Promoter ID:EPDNEWNC_M1389
Type:initiation region
Name:Gm10638_2
Description:predicted gene 10638 [Source:MGI Symbol;Acc:MGI:3704316]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38886,745,686 - 86,745,746EPDNEWNC
RGD ID:6843199
Promoter ID:MM_KWN:55178
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR_027829
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36889,268,781 - 89,270,397 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000074178 Ensembl
MGD MGI:3704316 ENTREZGENE
NCBI Gene 666945 ENTREZGENE
PhenoGen Gm10638 PhenoGen
RNAcentral URS000075D13D RNACentral
UniGene Mm.391806 ENTREZGENE
UniProt Q3V0L6_MOUSE UniProtKB/TrEMBL