Gm16982 (predicted gene, 16982) - Rat Genome Database

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Gene: Gm16982 (predicted gene, 16982) Mus musculus
Analyze
Symbol: Gm16982
Name: predicted gene, 16982
RGD ID: 1624927
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,189,979 - 141,193,660 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,189,979 - 141,193,660 (-)EnsemblGRCm39 Ensembl
GRCm387141,610,066 - 141,613,747 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7141,610,066 - 141,613,747 (-)EnsemblGRCm38mm10GRCm38
MGSCv377148,795,965 - 148,799,646 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera7141,403,972 - 141,407,653 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm16982
88 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:119
Interacting mature miRNAs:126
Transcripts:ENSMUST00000181275
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,189,979 - 141,193,660 (-)Ensembl
GRCm38.p6 Ensembl7141,610,066 - 141,613,747 (-)Ensembl
RefSeq Acc Id: NR_040337
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,189,979 - 141,193,660 (-)NCBI
GRCm387141,610,066 - 141,613,747 (-)ENTREZGENE
Celera7141,403,972 - 141,407,653 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB30297 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:8666155
Promoter ID:EPDNEW_M11109
Type:single initiation site
Name:Gm16982_1
Description:Mus musculus predicted gene, 16982 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387141,613,718 - 141,613,778EPDNEW
RGD ID:15093388
Promoter ID:EPDNEWNC_M1285
Type:single initiation site
Name:Gm16982_1
Description:predicted gene, 16982 [Source:MGI Symbol;Acc:MGI:4439906]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387141,613,718 - 141,613,778EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097170 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181275 ENTREZGENE
MGD MGI:4439906 ENTREZGENE
NCBI Gene 100036523 ENTREZGENE
PhenoGen Gm16982 PhenoGen
RNAcentral URS0000759F94 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm16982  predicted gene, 16982  ENSMUSG00000038461  predicted gene, ENSMUSG00000038461  Symbol and/or name change 5135510 APPROVED