Gm9804 (predicted gene 9804) - Rat Genome Database

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Gene: Gm9804 (predicted gene 9804) Mus musculus
Analyze
Symbol: Gm9804
Name: predicted gene 9804
RGD ID: 1624897
MGI Page MGI
Description:
Type: protein-coding
Previously known as: ENSMUSG00000045946
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm381249,393,173 - 49,404,165 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371250,494,160 - 50,505,152 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361250,269,300 - 50,280,292 (+)NCBIMGSCv36mm8
Celera1250,713,089 - 50,724,082 (+)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1221.78NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:81
Interacting mature miRNAs:86
Transcripts:ENSMUST00000056234
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


RefSeq Acc Id: XM_884978   ⟹   XP_890071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381249,393,173 - 49,404,165 (+)ENTREZGENE
MGSCv371250,494,160 - 50,505,152 (+)RGD
cM Map12 ENTREZGENE
RefSeq Acc Id: XM_914998   ⟹   XP_920091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera1250,713,089 - 50,724,082 (+)RGD
Protein Sequences
GenBank Protein BAC37730 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_920091   ⟸   XM_914998
RefSeq Acc Id: XP_890071   ⟸   XM_884978

Promoters
RGD ID:8678230
Promoter ID:EPDNEW_M17146
Type:initiation region
Name:AK079718_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381249,401,278 - 49,401,338EPDNEW
RGD ID:6823033
Promoter ID:MM_KWN:11595
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:AK079718_GM9804
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361250,501,801 - 50,502,352 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
MGD MGI:3704387 ENTREZGENE
NCBI Gene 620583 ENTREZGENE
PhenoGen Gm9804 PhenoGen
UniProt Q8BV68_MOUSE UniProtKB/TrEMBL