A630072L19Rik (RIKEN cDNA A630072L19 gene) - Rat Genome Database

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Gene: A630072L19Rik (RIKEN cDNA A630072L19 gene) Mus musculus
Analyze
Symbol: A630072L19Rik
Name: RIKEN cDNA A630072L19 gene
RGD ID: 1624741
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: ENSMUSG00000072877
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,905,378 - 100,910,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,908,001 - 100,916,134 (+)EnsemblGRCm39 Ensembl
GRCm3812100,938,104 - 100,944,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,941,742 - 100,949,875 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712102,179,952 - 102,188,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera12102,168,982 - 102,177,115 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141073  


Genomics

Variants

.
Variants in A630072L19Rik
178 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
4141586Ssrq6_mstress response QTL 6 (mouse)Not determined100532075102461265Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000180617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,908,001 - 100,916,134 (+)Ensembl
GRCm38.p6 Ensembl12100,941,742 - 100,949,875 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,908,116 - 100,910,534 (+)Ensembl
GRCm38.p6 Ensembl12100,941,857 - 100,944,275 (+)Ensembl
RefSeq Acc Id: XR_003950127
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,905,378 - 100,910,479 (+)NCBI
GRCm3812100,939,133 - 100,944,220 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950129
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,907,494 - 100,910,479 (+)NCBI
GRCm3812100,941,235 - 100,944,220 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950130
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,905,417 - 100,910,479 (+)NCBI
GRCm3812100,939,158 - 100,944,220 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE32169 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097160 Ensembl
MGD MGI:3641830 ENTREZGENE
NCBI Gene 100038467 ENTREZGENE
PhenoGen A630072L19Rik PhenoGen
UniProt Q3U5B0_MOUSE UniProtKB/TrEMBL