Gm10535 (predicted gene 10535) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm10535 (predicted gene 10535) Mus musculus
Analyze
Symbol: Gm10535
Name: predicted gene 10535
RGD ID: 1624598
MGI Page MGI
Description:
Type: gene (Ensembl: lncRNA)
Previously known as: ENSMUSG00000073556
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl1135,036,699 - 135,041,116 (+)EnsemblGRCm39 Ensembl
GRCm381135,108,961 - 135,113,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,108,961 - 135,113,378 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,005,538 - 137,009,955 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1137,736,135 - 137,740,340 (+)NCBICelera
cM Map158.24NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:125
Interacting mature miRNAs:129
Transcripts:ENSMUST00000182275
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
Ptprv  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371137,005,224 - 137,005,560UniSTSGRCm37
MGSCv371137,015,261 - 137,016,401UniSTSGRCm37
Celera1137,735,821 - 137,736,157UniSTS
Celera1137,745,646 - 137,746,845UniSTS
cM Map1 UniSTS
Ptprv  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,108,647 - 135,108,983UniSTSGRCm38
MGSCv371137,005,224 - 137,005,560UniSTSGRCm37
Celera1137,735,821 - 137,736,157UniSTS
cM Map1 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000182275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,036,699 - 135,041,116 (+)Ensembl
GRCm38.p6 Ensembl1135,108,961 - 135,113,378 (+)Ensembl
Protein Sequences
GenBank Protein BAE22326 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15092194
Promoter ID:EPDNEWNC_M110
Type:multiple initiation site
Name:Gm10535_1
Description:predicted gene 10535 [Source:MGI Symbol;Acc:MGI:3642442]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,108,962 - 135,109,022EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097988 Ensembl
MGD MGI:3642442 ENTREZGENE
NCBI Gene 100038590 ENTREZGENE
PhenoGen Gm10535 PhenoGen
UniProt Q3UY86_MOUSE UniProtKB/TrEMBL