Gm10440 (predicted gene 10440) - Rat Genome Database

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Gene: Gm10440 (predicted gene 10440) Mus musculus
Analyze
Symbol: Gm10440
Name: predicted gene 10440
RGD ID: 1624479
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: D130065D13; ENSMUSG00000072936; hypothetical protein LOC330086
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39554,507,334 - 54,515,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl554,507,333 - 54,515,885 (+)EnsemblGRCm39 Ensembl
GRCm38554,349,992 - 54,358,542 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl554,349,991 - 54,358,543 (+)EnsemblGRCm38mm10GRCm38
MGSCv37554,741,231 - 54,749,781 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera551,729,558 - 51,738,105 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map529.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in Gm10440
303 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4141473Lfnq1_mlung function QTL 1 (mouse)Not determined5441111064579648Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000197424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl554,507,333 - 54,515,885 (+)Ensembl
GRCm38.p6 Ensembl554,349,991 - 54,358,543 (+)Ensembl
RefSeq Acc Id: NR_038045
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39554,507,334 - 54,515,884 (+)NCBI
GRCm38554,349,992 - 54,358,542 (+)ENTREZGENE
Celera551,729,558 - 51,738,105 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC34720 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000105912 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000197424 ENTREZGENE
MGD MGI:3641803 ENTREZGENE
NCBI Gene 330086 ENTREZGENE
PhenoGen Gm10440 PhenoGen
RNAcentral URS000075AF8B RNACentral
UniProt Q8BQ23_MOUSE UniProtKB/TrEMBL