Zfp882 (zinc finger protein 882) - Rat Genome Database

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Gene: Zfp882 (zinc finger protein 882) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp882
Name: zinc finger protein 882
RGD ID: 1624478
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF443 (zinc finger protein 443) and ZNF823 (zinc finger protein 823).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ccnb2-ps; cyclin B2, pseudogene; ENSMUSG00000052439; Gm15468
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Pseudogenes: Gm21015  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,662,450 - 72,672,695 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,662,452 - 72,670,198 (+)EnsemblGRCm39 Ensembl
GRCm38871,908,606 - 71,918,851 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,908,608 - 71,916,354 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,432,505 - 74,442,750 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera876,265,048 - 76,275,291 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12819135   PMID:15618518   PMID:16141072   PMID:16141073   PMID:21677750  
PMID:21873635  


Genomics

Variants

.
Variants in Zfp882
278 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:457
Count of miRNA genes:327
Interacting mature miRNAs:346
Transcripts:ENSMUST00000110002, ENSMUST00000125802, ENSMUST00000126607
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
11039503Ccc4_mcolitis susceptibility in the Collaborative Cross 4 (mouse)86517423778002730Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000110002   ⟹   ENSMUSP00000105629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl872,662,452 - 72,670,198 (+)Ensembl
GRCm38.p6 Ensembl871,908,608 - 71,916,354 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125802   ⟹   ENSMUSP00000121316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl872,662,501 - 72,667,427 (+)Ensembl
GRCm38.p6 Ensembl871,908,657 - 71,913,583 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126607   ⟹   ENSMUSP00000119978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl872,662,749 - 72,667,431 (+)Ensembl
GRCm38.p6 Ensembl871,908,905 - 71,913,587 (+)Ensembl
RefSeq Acc Id: NM_001166645   ⟹   NP_001160117
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,662,450 - 72,672,695 (+)NCBI
GRCm38871,908,606 - 71,918,851 (+)ENTREZGENE
MGSCv37874,432,505 - 74,442,750 (+)RGD
Celera876,265,048 - 76,275,291 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001160117 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC30579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000105629
  ENSMUSP00000105629.2
  ENSMUSP00000119978.2
  ENSMUSP00000121316.2
Reference Protein Sequences
RefSeq Acc Id: NP_001160117   ⟸   NM_001166645
- UniProtKB: E9Q4R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000121316   ⟸   ENSMUST00000125802
RefSeq Acc Id: ENSMUSP00000105629   ⟸   ENSMUST00000110002
RefSeq Acc Id: ENSMUSP00000119978   ⟸   ENSMUST00000126607
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q4R4-F1-model_v2 AlphaFold E9Q4R4 1-555 view protein structure

Promoters
RGD ID:8667443
Promoter ID:EPDNEW_M11752
Type:initiation region
Name:Zfp882_1
Description:Mus musculus zinc finger protein 882 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,908,633 - 71,908,693EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3642748 AgrOrtholog
Ensembl Genes ENSMUSG00000089857 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110002 ENTREZGENE
  ENSMUST00000110002.8 UniProtKB/TrEMBL
  ENSMUST00000125802.8 UniProtKB/TrEMBL
  ENSMUST00000126607.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:382019 UniProtKB/TrEMBL
MGD MGI:3642748 ENTREZGENE
NCBI Gene 382019 ENTREZGENE
PANTHER GENE 10130-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 763 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp882 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt D3Z2V3_MOUSE UniProtKB/TrEMBL
  D3Z7G7_MOUSE UniProtKB/TrEMBL
  E9Q4R4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BYD7_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-02 Zfp882  zinc finger protein 882  Ccnb2-ps  cyclin B2, pseudogene  Data merged from RGD:1609865 737654 PROVISIONAL