Tnk2os (tyrosine kinase, non-receptor 2, opposite strand) - Rat Genome Database

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Gene: Tnk2os (tyrosine kinase, non-receptor 2, opposite strand) Mus musculus
Analyze
Symbol: Tnk2os
Name: tyrosine kinase, non-receptor 2, opposite strand
RGD ID: 1624405
MGI Page MGI
Description: INTERACTS WITH bisphenol A; titanium dioxide
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000075265; Gm10818
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391632,484,041 - 32,487,015 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1632,484,041 - 32,487,015 (-)EnsemblGRCm39 Ensembl
GRCm381632,665,223 - 32,668,197 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,665,223 - 32,668,197 (-)EnsemblGRCm38mm10GRCm38
MGSCv371632,665,309 - 32,668,283 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,666,358 - 32,668,283 (-)NCBIMGSCv36mm8
Celera1633,145,101 - 33,148,076 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Tnk2os
117 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:92
Interacting mature miRNAs:101
Transcripts:ENSMUST00000141256
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
25394537Skmw83_mskeletal muscle weight 83, soleus (mouse)163130446533189707Mouse
25671380Hrsq2_mhost response to SARS QTL 2, titer (mouse)163140250136540273Mouse
1300935Aod1_mautoimmune ovarian dysgenesis 1 (mouse)Not determined163213084032523112Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000141256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1632,484,041 - 32,487,015 (-)Ensembl
GRCm38.p6 Ensembl1632,665,223 - 32,668,197 (-)Ensembl
RefSeq Acc Id: NR_033493
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391632,484,041 - 32,487,015 (-)NCBI
GRCm381632,665,223 - 32,668,197 (-)ENTREZGENE
MGSCv371632,665,309 - 32,668,283 (-)RGD
Celera1633,145,101 - 33,148,076 (-)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE32130 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000075265 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000141256 ENTREZGENE
MGD MGI:3642140 ENTREZGENE
NCBI Gene 675921 ENTREZGENE
PhenoGen Tnk2os PhenoGen
RNAcentral URS000075CFD2 RNACentral
UniProt Q3U5E9_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Tnk2os  tyrosine kinase, non-receptor 2, opposite strand    Tnk2 opposite strand transcript  Symbol and/or name change 5135510 APPROVED
2013-11-19 Tnk2os  Tnk2 opposite strand transcript  Gm10818  predicted gene 10818  Symbol and/or name change 5135510 APPROVED