Sult1c1 (sulfotransferase family, cytosolic, 1C, member 1) - Rat Genome Database

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Gene: Sult1c1 (sulfotransferase family, cytosolic, 1C, member 1) Mus musculus
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Symbol: Sult1c1
Name: sulfotransferase family, cytosolic, 1C, member 1
RGD ID: 1624072
MGI Page MGI
Description: Exhibits aryl sulfotransferase activity. Involved in sulfur compound metabolic process. Localizes to cytoplasm. Is expressed in olfactory epithelium. Orthologous to several human genes including SULT1C3 (sulfotransferase family 1C member 3); INTERACTS WITH 1,2-dimethylhydrazine; eugenol; guaiacol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: (PST; (PST)G; mOL; mOLFST; P-S; P-SULT; phenol sulfotransferase; St; ST1C1; Stp2; sulfotransferase 1C1; sulfotransferase family 1A, phenol-preferring, member 2; Sult; Sult1a2
RGD Orthologs
Human
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391754,268,643 - 54,297,659 (-)NCBIGRCm39mm39
GRCm39 Ensembl1754,268,643 - 54,297,702 (-)Ensembl
GRCm381753,961,615 - 53,990,631 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1753,961,615 - 53,990,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv371754,100,940 - 54,129,956 (-)NCBIGRCm37mm9NCBIm37
MGSCv361753,426,544 - 53,455,560 (-)NCBImm8
Celera1757,389,714 - 57,419,268 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1728.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7601475   PMID:8641270   PMID:8661000   PMID:9284045   PMID:9434950   PMID:9560327   PMID:9566734   PMID:11125038   PMID:12466851   PMID:12477932   PMID:15167709   PMID:15489334  
PMID:16602821   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24028175   PMID:27626380  


Genomics

Comparative Map Data
Sult1c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391754,268,643 - 54,297,659 (-)NCBIGRCm39mm39
GRCm39 Ensembl1754,268,643 - 54,297,702 (-)Ensembl
GRCm381753,961,615 - 53,990,631 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1753,961,615 - 53,990,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv371754,100,940 - 54,129,956 (-)NCBIGRCm37mm9NCBIm37
MGSCv361753,426,544 - 53,455,560 (-)NCBImm8
Celera1757,389,714 - 57,419,268 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1728.07NCBI
SULT1C3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2108,239,971 - 108,265,351 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2108,247,195 - 108,265,351 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2108,239,968 - 108,265,351 (+)EnsemblGRCh38hg38GRCh38
GRCh382108,239,968 - 108,265,608 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372108,856,424 - 108,881,807 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,230,083 - 108,248,239 (+)NCBINCBI36hg18NCBI36
Celera2103,171,922 - 103,190,078 (+)NCBI
Cytogenetic Map2q12.3NCBI
HuRef2102,462,741 - 102,480,898 (+)NCBIHuRef
CHM1_12108,860,724 - 108,886,080 (+)NCBICHM1_1
Sult1c3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.297,221,580 - 7,266,991 (-)NCBI
Rnor_6.0 Ensembl94,930,818 - 4,978,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.094,931,038 - 4,978,847 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.093,978,166 - 4,025,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49486,576 - 531,962 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19517,647 - 532,182 (+)NCBI
Celera93,070,014 - 3,115,501 (-)NCBICelera
Cytogenetic Map9q11NCBI
SULT1C3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,610,282 - 35,644,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,610,989 - 35,644,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,532,772 - 35,566,646 (-)NCBI
ROS_Cfam_1.01036,464,237 - 36,498,469 (-)NCBI
UMICH_Zoey_3.11036,194,203 - 36,228,357 (-)NCBI
UNSW_CanFamBas_1.01036,480,359 - 36,514,550 (-)NCBI
UU_Cfam_GSD_1.01036,668,792 - 36,702,970 (-)NCBI
LOC101970597
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629294,182,312 - 94,201,456 (+)NCBI
SpeTri2.0NW_0049367291,783,124 - 1,796,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100623656
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1347,838,671 - 47,864,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2350,008,066 - 50,034,138 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SULT1C3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11411,621,851 - 11,638,719 (+)NCBI
ChlSab1.1 Ensembl1411,622,043 - 11,636,652 (+)Ensembl


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173565926669659396Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173648271570482715Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173840588672405969Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173849862572498625Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173849862572498625Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4022744774227623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174063218774632187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174340000067500000Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174620000082100000Mouse
35673315Ari1_mantibody response to influenza 1, day 7, IgG2a+IgG2c (mouse)174700000054400000Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)174970000069700000Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined174989696283897108Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5143195157227623Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175145143085451617Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175145143085451617Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:83
Interacting mature miRNAs:85
Transcripts:ENSMUST00000024738
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000024738   ⟹   ENSMUSP00000024738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1753,961,615 - 53,990,674 (-)Ensembl
RefSeq Acc Id: NM_018751   ⟹   NP_061221
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391754,268,643 - 54,297,659 (-)NCBI
GRCm381753,961,615 - 53,990,631 (-)ENTREZGENE
MGSCv371754,100,940 - 54,129,956 (-)RGD
Celera1757,389,714 - 57,419,268 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_061221 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC17740 (Get FASTA)   NCBI Sequence Viewer  
  AAH45149 (Get FASTA)   NCBI Sequence Viewer  
  EDL23673 (Get FASTA)   NCBI Sequence Viewer  
  Q80VR3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_061221   ⟸   NM_018751
- UniProtKB: Q80VR3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000024738   ⟸   ENSMUST00000024738

Promoters
RGD ID:13676426
Promoter ID:EPDNEW_M22362
Type:single initiation site
Name:Sult1c1_1
Description:Mus musculus sulfotransferase family, cytosolic, 1C, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22363  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381753,985,819 - 53,985,879EPDNEW
RGD ID:13676428
Promoter ID:EPDNEW_M22363
Type:single initiation site
Name:Sult1c1_2
Description:Mus musculus sulfotransferase family, cytosolic, 1C, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22362  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381753,990,674 - 53,990,734EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102928 AgrOrtholog
Ensembl Genes ENSMUSG00000023943 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000024738 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000024738 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Sulfotransferase_dom UniProtKB/Swiss-Prot
KEGG Report mmu:20888 UniProtKB/Swiss-Prot
MGD MGI:102928 ENTREZGENE
NCBI Gene 20888 ENTREZGENE
Pfam Sulfotransfer_1 UniProtKB/Swiss-Prot
PhenoGen Sult1c1 PhenoGen
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt Q80VR3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O70262 UniProtKB/Swiss-Prot