Ccdc120 (coiled-coil domain containing 120) - Rat Genome Database

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Gene: Ccdc120 (coiled-coil domain containing 120) Mus musculus
Analyze
Symbol: Ccdc120
Name: coiled-coil domain containing 120
RGD ID: 1624027
MGI Page MGI
Description: Predicted to be involved in microtubule anchoring at centrosome and protein localization. Predicted to be located in centriole. Predicted to be part of centriolar subdistal appendage. Is expressed in several structures, including aorta; esophagus; exocrine gland; female reproductive system; and thymus. Orthologous to human CCDC120 (coiled-coil domain containing 120).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA030924; coiled-coil domain-containing protein 120; DXImx50; DXImx50e; Jm11; MGC56838; Sfc2; Sfc25
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,597,953 - 7,607,563 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,597,953 - 7,617,144 (-)EnsemblGRCm39 Ensembl
GRCm38X7,731,714 - 7,741,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,731,714 - 7,750,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,308,840 - 7,318,450 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,888,673 - 6,898,283 (-)NCBIMGSCv36mm8
CeleraX3,729,252 - 3,738,844 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10857745   PMID:11042159   PMID:11076861   PMID:11138001   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:24194600   PMID:27626380  


Genomics

Comparative Map Data
Ccdc120
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,597,953 - 7,607,563 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,597,953 - 7,617,144 (-)EnsemblGRCm39 Ensembl
GRCm38X7,731,714 - 7,741,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,731,714 - 7,750,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,308,840 - 7,318,450 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,888,673 - 6,898,283 (-)NCBIMGSCv36mm8
CeleraX3,729,252 - 3,738,844 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.48NCBI
CCDC120
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,053,572 - 49,069,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,053,572 - 49,069,857 (+)EnsemblGRCh38hg38GRCh38
GRCh37X48,911,101 - 48,927,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,803,460 - 48,814,454 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX52,736,981 - 52,747,975 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,568,375 - 46,584,146 (+)NCBIHuRef
CHM1_1X48,942,292 - 48,958,832 (+)NCBICHM1_1
T2T-CHM13v2.0X48,465,178 - 48,481,578 (+)NCBIT2T-CHM13v2.0
Ccdc120
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,437,219 - 17,443,716 (+)NCBIGRCr8
mRatBN7.2X14,753,594 - 14,772,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,753,696 - 14,772,743 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,579,312 - 19,585,814 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,497,302 - 20,503,804 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,762,469 - 16,768,971 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,610,230 - 15,616,727 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,598,652 - 15,617,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,391,452 - 16,397,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,804,333 - 26,810,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX14,849,524 - 14,855,989 (+)NCBICelera
Cytogenetic MapXq12NCBI
Ccdc120
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543587,321 - 592,544 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543577,078 - 594,076 (+)NCBIChiLan1.0ChiLan1.0
CCDC120
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,543,395 - 50,559,846 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,546,797 - 50,563,225 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,341,834 - 41,367,761 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,207,391 - 49,223,622 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,207,391 - 49,223,552 (+)Ensemblpanpan1.1panPan2
CCDC120
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,206,553 - 42,217,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,210,804 - 42,216,993 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,577,484 - 16,593,254 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,338,079 - 42,353,858 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,338,081 - 42,353,858 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,324,422 - 42,340,191 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,312,074 - 42,327,841 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,406,817 - 42,422,586 (+)NCBIUU_Cfam_GSD_1.0
Ccdc120
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,713,749 - 34,731,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721964,603 - 969,992 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721954,188 - 971,507 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC120
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,134,275 - 43,146,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,128,938 - 43,146,777 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,976,893 - 47,994,717 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC120
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,161,238 - 46,178,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,170,651 - 46,177,244 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc120
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893831,833 - 841,884 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893824,834 - 841,786 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc120
230 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2059
Count of miRNA genes:686
Interacting mature miRNAs:884
Transcripts:ENSMUST00000033490, ENSMUST00000128011, ENSMUST00000128289, ENSMUST00000128852, ENSMUST00000139499, ENSMUST00000153925, ENSMUST00000154977, ENSMUST00000156787
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

Markers in Region
DXImx18  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,735,931 - 7,736,084UniSTSGRCm38
MGSCv37X7,313,057 - 7,313,210UniSTSGRCm37
CeleraX3,734,474 - 3,734,627UniSTS
Cytogenetic MapXA1.1UniSTS
cM MapX UniSTS
DXImx30  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,731,606 - 7,731,766UniSTSGRCm38
MGSCv37X7,308,732 - 7,308,892UniSTSGRCm37
CeleraX3,738,792 - 3,738,952UniSTS
Cytogenetic MapXA1.1UniSTS
cM MapX UniSTS
DXMit247  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,731,611 - 7,731,700UniSTSGRCm38
MGSCv37X7,308,737 - 7,308,826UniSTSGRCm37
CeleraX3,738,858 - 3,738,947UniSTS
Cytogenetic MapXA1.1UniSTS
cM MapX2.2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000033490   ⟹   ENSMUSP00000033490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,597,953 - 7,607,580 (-)Ensembl
GRCm38.p6 EnsemblX7,731,714 - 7,741,341 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,471 - 7,606,470 (-)Ensembl
GRCm38.p6 EnsemblX7,738,232 - 7,740,231 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128289   ⟹   ENSMUSP00000119351
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,200 - 7,606,449 (-)Ensembl
GRCm38.p6 EnsemblX7,737,961 - 7,740,210 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,482 - 7,607,563 (-)Ensembl
GRCm38.p6 EnsemblX7,738,243 - 7,741,324 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,752 - 7,617,136 (-)Ensembl
GRCm38.p6 EnsemblX7,738,513 - 7,750,897 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,457 - 7,607,547 (-)Ensembl
GRCm38.p6 EnsemblX7,738,218 - 7,741,308 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,699 - 7,617,144 (-)Ensembl
GRCm38.p6 EnsemblX7,738,460 - 7,750,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,604,609 - 7,606,446 (-)Ensembl
GRCm38.p6 EnsemblX7,738,370 - 7,740,207 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224502   ⟹   ENSMUSP00000153379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,598,691 - 7,600,143 (-)Ensembl
GRCm38.p6 EnsemblX7,732,452 - 7,733,904 (-)Ensembl
RefSeq Acc Id: NM_207202   ⟹   NP_997085
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,597,953 - 7,607,563 (-)NCBI
GRCm38X7,731,714 - 7,741,324 (-)ENTREZGENE
MGSCv37X7,308,840 - 7,318,450 (-)RGD
CeleraX3,729,252 - 3,738,844 (+)RGD
cM MapX ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_997085 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A2AEV7 (Get FASTA)   NCBI Sequence Viewer  
  AAI39065 (Get FASTA)   NCBI Sequence Viewer  
  EDL33916 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000033490
  ENSMUSP00000033490.7
  ENSMUSP00000119351.2
  ENSMUSP00000153379.2
RefSeq Acc Id: NP_997085   ⟸   NM_207202
- UniProtKB: A2AEV8 (UniProtKB/Swiss-Prot),   A2AEV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000153379   ⟸   ENSMUST00000224502
RefSeq Acc Id: ENSMUSP00000033490   ⟸   ENSMUST00000033490
RefSeq Acc Id: ENSMUSP00000119351   ⟸   ENSMUST00000128289

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2AEV7-F1-model_v2 AlphaFold A2AEV7 1-629 view protein structure

Promoters
RGD ID:6848515
Promoter ID:MM_ACW:52663
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:CCDC120.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,310,921 - 7,311,421 (-)MPROMDB
RGD ID:6845550
Promoter ID:MM_KWN:59430
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung
Transcripts:OTTMUST00000043102,   OTTMUST00000043103,   OTTMUST00000043159
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,317,106 - 7,318,237 (-)MPROMDB
RGD ID:6845549
Promoter ID:MM_KWN:59432
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   ES_Cell,   MEF_B6
Transcripts:OTTMUST00000043099,   OTTMUST00000043100
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,327,774 - 7,328,274 (-)MPROMDB
RGD ID:13679990
Promoter ID:EPDNEW_M24144
Type:multiple initiation site
Name:Ccdc120_1
Description:Mus musculus coiled-coil domain containing 120 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,741,298 - 7,741,358EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859619 AgrOrtholog
Ensembl Genes ENSMUSG00000031150 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033490 ENTREZGENE
  ENSMUST00000033490.13 UniProtKB/Swiss-Prot
  ENSMUST00000128289.8 UniProtKB/TrEMBL
  ENSMUST00000224502.2 UniProtKB/TrEMBL
InterPro CCDC120/INAVA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3338 UniProtKB/Swiss-Prot
KEGG Report mmu:54648 UniProtKB/Swiss-Prot
MGD MGI:1859619 ENTREZGENE
NCBI Gene 54648 ENTREZGENE
PANTHER PTHR16093 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16093:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3338 UniProtKB/Swiss-Prot
PhenoGen Ccdc120 PhenoGen
UniProt A0A286YDD1_MOUSE UniProtKB/TrEMBL
  A0A5H1ZRM7_MOUSE UniProtKB/TrEMBL
  A2AEV7 ENTREZGENE
  A2AEV8 ENTREZGENE
  CC120_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AEV8 UniProtKB/Swiss-Prot