1700011L22Rik (RIKEN cDNA 1700011L22 gene) - Rat Genome Database
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Gene: 1700011L22Rik (RIKEN cDNA 1700011L22 gene) Mus musculus
Analyze
Symbol: 1700011L22Rik
Name: RIKEN cDNA 1700011L22 gene
RGD ID: 1623979
MGI Page MGI
Description: Orthologous to human C4orf51 (chromosome 4 open reading frame 51); INTERACTS WITH benzo[a]pyrene (ortholog); rifampicin (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC67687; uncharacterized protein C4orf51 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,937,059 - 79,975,212 (-)NCBIGRCm39mm39
GRCm38879,210,430 - 79,248,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl879,210,431 - 79,248,570 (-)EnsemblGRCm38mm10GRCm38
MGSCv37881,734,329 - 81,772,482 (-)NCBIGRCm37mm9NCBIm37
MGSCv36882,106,502 - 82,144,642 (-)NCBImm8
Celera883,487,532 - 83,525,636 (-)NCBICelera
Cytogenetic Map8C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
1700011L22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,937,059 - 79,975,212 (-)NCBIGRCm39mm39
GRCm38879,210,430 - 79,248,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl879,210,431 - 79,248,570 (-)EnsemblGRCm38mm10GRCm38
MGSCv37881,734,329 - 81,772,482 (-)NCBIGRCm37mm9NCBIm37
MGSCv36882,106,502 - 82,144,642 (-)NCBImm8
Celera883,487,532 - 83,525,636 (-)NCBICelera
Cytogenetic Map8C1NCBI
C4orf51
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4145,680,115 - 145,771,032 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl4145,680,146 - 145,771,032 (+)EnsemblGRCh38hg38GRCh38
GRCh384145,680,100 - 145,792,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374146,601,356 - 146,653,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364146,820,806 - 146,873,399 (+)NCBINCBI36hg18NCBI36
Celera4143,928,891 - 143,981,824 (+)NCBI
Cytogenetic Map4q31.21NCBI
HuRef4142,331,319 - 142,382,942 (+)NCBIHuRef
CHM1_14146,577,928 - 146,631,252 (+)NCBICHM1_1
LOC498933
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01932,344,078 - 32,380,029 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1932,344,078 - 32,380,025 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,240,203 - 43,275,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41930,505,305 - 30,540,608 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1928,177,863 - 28,212,691 (+)NCBICelera
Cytogenetic Map19q11NCBI
LOC102007039
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554281,500,090 - 1,529,078 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554281,503,025 - 1,543,635 (+)NCBIChiLan1.0ChiLan1.0
C4H4orf51
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14149,681,583 - 149,732,163 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4149,681,583 - 149,753,557 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04138,022,499 - 138,094,804 (+)NCBIMhudiblu_PPA_v0panPan3
C15H4orf51
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11544,255,853 - 44,282,782 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC106144956
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365353,464,407 - 3,467,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH4orf51
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1792,241,869 - 92,313,423 (+)NCBI
ChlSab1.1 Ensembl792,242,439 - 92,283,850 (+)Ensembl
CUNH4orf51
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248534,589,551 - 4,627,607 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:126
Interacting mature miRNAs:138
Transcripts:ENSMUST00000034109
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034109   ⟹   ENSMUSP00000034109
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl879,210,431 - 79,248,570 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210889
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl879,223,297 - 79,248,543 (-)Ensembl
RefSeq Acc Id: NM_026315   ⟹   NP_080591
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,937,059 - 79,975,212 (-)NCBI
GRCm38879,210,430 - 79,248,583 (-)NCBI
MGSCv37881,734,329 - 81,772,482 (-)RGD
Celera883,487,532 - 83,525,636 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248492   ⟹   XP_011246794
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,943,028 - 79,975,208 (-)NCBI
GRCm38879,216,386 - 79,248,663 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_080591 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246794 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB24292 (Get FASTA)   NCBI Sequence Viewer  
  EDL10867 (Get FASTA)   NCBI Sequence Viewer  
  Q9DAF8 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_080591   ⟸   NM_026315
- UniProtKB: Q9DAF8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246794   ⟸   XM_011248492
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000034109   ⟸   ENSMUST00000034109

Promoters
RGD ID:8667545
Promoter ID:EPDNEW_M11803
Type:initiation region
Name:1700011L22Rik_1
Description:Mus musculus RIKEN cDNA 1700011L22 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38879,248,543 - 79,248,603EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914937 AgrOrtholog
Ensembl Genes ENSMUSG00000031682 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000034109 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034109 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro DUF4722 UniProtKB/Swiss-Prot
KEGG Report mmu:67687 UniProtKB/Swiss-Prot
MGD MGI:1914937 ENTREZGENE
NCBI Gene 67687 ENTREZGENE
Pfam DUF4722 UniProtKB/Swiss-Prot
PhenoGen 1700011L22Rik PhenoGen
UniGene Mm.178707 ENTREZGENE
UniProt CD051_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary G3X910 UniProtKB/Swiss-Prot